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Updated: Nov 9, 2025

A Protocol for Analyzing Hepatitis C Virus Replication
Published on: June 26, 2014
Using the Electronic Health Record to Characterize the Hepatitis C Virus Care Cascade
Shannon M Christy1,2,3,4, Richard R Reich5, Julie A Rathwell3,6
125301 Department of Health Outcomes and Behavior, Division of Population Science, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL, USA.
Insights
Electronic health records reliably capture hepatitis C virus (HCV) testing data. However, manual review is still needed to track HCV treatment initiation and completion for effective screening interventions.
Area of Science:
- Hepatology
- Public Health
- Health Informatics
Background:
- Chronic hepatitis C virus (HCV) infection is a significant risk factor for hepatocellular carcinoma.
- Effective screening and treatment interventions are crucial for managing HCV infection.
- Evaluating data sources for accuracy in capturing HCV testing and treatment is essential for public health initiatives.
Purpose of the Study:
- To assess the concordance between electronic health record (EHR) data and manual medical record review for HCV testing and treatment data.
- To estimate the rates of HCV treatment initiation and completion among patients with chronic HCV infection.
Main Methods:
- A review of 177 patient medical records from an academic health care system (2015-2018).
- Comparison of EHR data warehouse with manual medical record review using Cohen κ coefficient for concordance.
- Descriptive statistics to determine treatment initiation and completion rates.
Main Results:
- Generally good concordance (κ = 0.66–0.87) between EHR and manual review for HCV testing data.
- The EHR data warehouse did not capture crucial HCV treatment variables.
- Manual review identified 28 patients with chronic HCV; 14 initiated treatment, and 9 achieved viral cure.
Conclusions:
- EHR data is generally reliable for HCV testing information.
- Manual medical record review remains necessary for comprehensive data on HCV treatment initiation and completion.
- Improvements in EHR design and natural language processing are needed to fully capture treatment data.
Objectives:
Chronic hepatitis C virus (HCV) infection is one of the main causes of hepatocellular carcinoma. Before initiating a multilevel HCV screening intervention, we sought to (1) describe concordance between the electronic health record (EHR) data warehouse and manual medical record review in recording aspects of HCV testing and treatment and (2) estimate the percentage of patients with chronic HCV infection who initiated and completed HCV treatment using manual medical record review.
Methods:
We examined the medical records for 177 patients (100 randomly selected patients born during 1945-1965 without evidence of HCV testing and 77 adult patients of any birth cohort who had completed HCV testing) with a primary care or relevant specialist visit at an academic health care system in Tampa, Florida, from 2015 through 2018. We used the Cohen κ coefficient to examine the degree of concordance between the searchable data warehouse and the medical record review abstractions. Descriptive statistics characterized referral to and receipt of treatment among patients with chronic HCV infection from medical record review.
Results:
We found generally good concordance between the data warehouse abstraction and medical record review for HCV testing data (κ ranged from 0.66 to 0.87). However, the data warehouse failed to capture data on HCV treatment variables. According to medical record review, 28 patients had chronic HCV infection; 16 patients were prescribed treatment, 14 initiated treatment, and 9 achieved and had a reported posttreatment undetected HCV viral load.
Conclusions:
Using data warehouse data provides generally reliable HCV testing information. However, without the use of natural language processing and purposeful EHR design, manual medical record reviews will likely be required to characterize treatment initiation and completion.
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