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Updated: Nov 9, 2025

Genome-wide Screen for miRNA Targets Using the MISSION Target ID Library
Published on: April 6, 2012
MicroRNA-496 inhibits triple negative breast cancer cell proliferation by targeting Del-1
Soo Jung Lee1, Jae-Hwan Jeong2, Jeeyeon Lee3
1Department of Oncology/Hematology, School of Medicine, Kyungpook National University, Kyungpook National University Chilgok Hospital.
Abstract:
Del-1 has been linked to the pathogenesis of various cancers, including breast cancer. However, the regulation of Del-1 expression remains unclear. We previously reported the interaction between microRNA-137 (miR-137) and the Del-1 gene. In this study, we investigated miR-496 and miR-137 as regulators of Del-1 expression in triple negative breast cancer (TNBC). Del-1 mRNA and miR-496 were measured by quantitative PCR in breast cancer cells (MDA-MB-231, MCF7, SK-BR3, and T-47D) and tissues from 30 patients with TNBC. The effects of miR-496 on cell proliferation, migration, and invasion were determined with MTT, wound healing, and Matrigel transwell assays, respectively. In MDA-MB-231 cells, miR-496 levels were remarkably low and Del-1 mRNA levels were higher than in other breast cancer cell lines. Luciferase reporter assays revealed that miR-496 binds the 3'-UTR of Del-1 and Del-1 expression is downregulated by miR-496 mimics. Furthermore, miR-496 inhibited the proliferation, migration, and invasion of MDA-MB-231 cells. The effects of miR-496 on cell proliferation were additive with those of miR-137, another miRNA that regulates Del-1 expression. Moreover, in the 30 TNBC specimens, miR-496 was downregulated (P < .005) and the levels of Del-1 in the plasma were significantly elevated as compared with in normal controls (P = .0142). The Cancer Genome Atlas (TCGA) data showed the correlation of miR-496 expression with better overall survival in patients with early TNBC. In in silico and in vitro analyses, we showed that Del-1 is a target of miR-496 in TNBC and thereby affects cancer progression. Our findings suggest that miR-496 and miR-137 additively target Del-1 and act as modulating factors in TNBC. They are potentially new biomarkers for patients with TNBC.
Insights
MicroRNA-496 (miR-496) and microRNA-137 (miR-137) target Del-1, inhibiting triple-negative breast cancer (TNBC) progression. Downregulated miR-496 and elevated Del-1 in TNBC suggest potential diagnostic biomarkers.
Area of Science:
- Molecular Biology
- Oncology
- Genetics
Background:
- Del-1 is implicated in breast cancer pathogenesis, but its expression regulation is unclear.
- Previous studies identified microRNA-137 (miR-137) as a regulator of Del-1.
- Triple-negative breast cancer (TNBC) presents unique challenges in treatment and diagnosis.
Purpose of the Study:
- To investigate the roles of miR-496 and miR-137 in regulating Del-1 expression in TNBC.
- To assess the impact of miR-496 on TNBC cell behavior (proliferation, migration, invasion).
- To evaluate miR-496 and Del-1 as potential biomarkers for TNBC.
Main Methods:
- Quantitative PCR to measure Del-1 mRNA and miR-496 levels in breast cancer cell lines and patient tissues.
- Cellular assays (MTT, wound healing, Matrigel transwell) to assess miR-496's effects on proliferation, migration, and invasion.
- Luciferase reporter assays to confirm direct binding of miR-496 to Del-1 3'-UTR.
- Analysis of The Cancer Genome Atlas (TCGA) data for survival correlations.
Main Results:
- miR-496 was significantly downregulated, and Del-1 mRNA was upregulated in MDA-MB-231 TNBC cells.
- miR-496 directly binds to the 3'-UTR of Del-1, downregulating its expression.
- miR-496 inhibited proliferation, migration, and invasion of MDA-MB-231 cells, with additive effects to miR-137.
- TNBC patient specimens showed downregulated miR-496 and elevated plasma Del-1 levels.
- TCGA data indicated that higher miR-496 expression correlates with better overall survival in early TNBC.
Conclusions:
- Del-1 is a direct target of miR-496 in TNBC, influencing cancer progression.
- miR-496 and miR-137 act additively to target Del-1, modulating TNBC.
- miR-496 and Del-1 show potential as novel biomarkers for TNBC patients.
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