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A method for systematically ranking therapeutic drug candidates using multiple uncertain screening criteria
Xubiao Peng1, Ebrima Gibbs2, Judith M Silverman2
1Department of Physics and Astronomy, University of British Columbia, Vancouver, BC, Canada.
Multiple criteria decision making (MCDM) methods, including SMAA-TOPSIS, systematically rank antibody therapeutics for Alzheimer's disease. New metrics, Retention Probability and Topness, assess ranking confidence, improving drug candidate selection.
Area of Science:
- Biotechnology
- Computational Biology
- Pharmacology
Background:
- Drug development screening often yields ambiguous results, complicating lead candidate selection.
- Multiple screening criteria for antibody therapeutics present a complex decision-making challenge.
Purpose of the Study:
- To apply multiple criteria decision making (MCDM) methods for ranking antibody therapeutics.
- To introduce novel metrics, Retention Probability and Topness, for robust candidate ranking and confidence assessment.
- To develop a systematic approach for identifying lead antibody therapeutics for Alzheimer's disease.
Main Methods:
- Employed the SMAA-TOPSIS method to rank antibodies based on up to eight weighted screening criteria.
- Assessed the robustness of rankings against uncertainties in screening measurements and criterion weights.
- Proposed and utilized Retention Probability and Topness for evaluating ranking confidence.
Main Results:
- The MCDM method successfully identified true positives and negatives in synthetic data.
- Rankings correlated well with the clinical status of antibodies (approved vs. in trials).
- The method facilitates ranking analysis using antibody developability profiles.
Conclusions:
- The proposed MCDM approach offers a systematic way to screen antibody therapeutics, especially with complex multi-variate data.
- This method can expose additional potential leads, increasing the likelihood of success in clinical trials.
- A webserver is available for applying this method to user-generated data.
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