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Updated: Nov 9, 2025

Identification of Kinase-substrate Pairs Using High Throughput Screening
Published on: August 29, 2015
mTORC2 controls the activity of PKC and Akt by phosphorylating a conserved TOR interaction motif
Timothy R Baffi1,2, Gema Lordén1, Jacob M Wozniak1,2,3
1Department of Pharmacology, University of California at San Diego, La Jolla, CA 92093, USA.
Abstract:
The complex mTORC2 is accepted to be the kinase that controls the phosphorylation of the hydrophobic motif, a key regulatory switch for AGC kinases, although whether mTOR directly phosphorylates this motif remains controversial. Here, we identified an mTOR-mediated phosphorylation site that we termed the TOR interaction motif (TIM; F-x3-F-pT), which controls the phosphorylation of the hydrophobic motif of PKC and Akt and the activity of these kinases. The TIM is invariant in mTORC2-dependent AGC kinases, is evolutionarily conserved, and coevolved with mTORC2 components. Mutation of this motif in Akt1 and PKCβII abolished cellular kinase activity by impairing activation loop and hydrophobic motif phosphorylation. mTORC2 directly phosphorylated the PKC TIM in vitro, and this phosphorylation event was detected in mouse brain. Overexpression of PDK1 in mTORC2-deficient cells rescued hydrophobic motif phosphorylation of PKC and Akt by a mechanism dependent on their intrinsic catalytic activity, revealing that mTORC2 facilitates the PDK1 phosphorylation step, which, in turn, enables autophosphorylation. Structural analysis revealed that PKC homodimerization is driven by a TIM-containing helix, and biophysical proximity assays showed that newly synthesized, unphosphorylated PKC dimerizes in cells. Furthermore, disruption of the dimer interface by stapled peptides promoted hydrophobic motif phosphorylation. Our data support a model in which mTORC2 relieves nascent PKC dimerization through TIM phosphorylation, recruiting PDK1 to phosphorylate the activation loop and triggering intramolecular hydrophobic motif autophosphorylation. Identification of TIM phosphorylation and its role in the regulation of PKC provides the basis for AGC kinase regulation by mTORC2.
Insights
Researchers discovered a new phosphorylation site, the TOR interaction motif (TIM), crucial for AGC kinase regulation by mTORC2. TIM phosphorylation by mTORC2 controls hydrophobic motif phosphorylation and kinase activity in PKC and Akt.
Area of Science:
- Molecular Biology
- Cell Signaling
- Biochemistry
Background:
- The mechanistic target of rapamycin complex 2 (mTORC2) is known to regulate AGC kinases, but its direct role in phosphorylating the hydrophobic motif remains debated.
- AGC kinases play critical roles in various cellular processes, and their regulation is essential for maintaining cellular homeostasis.
Purpose of the Study:
- To identify and characterize a novel mTOR-mediated phosphorylation site regulating AGC kinase activity.
- To elucidate the mechanism by which mTORC2 controls the phosphorylation of the hydrophobic motif in kinases like Protein Kinase C (PKC) and Akt.
Main Methods:
- Identification of a novel phosphorylation site, the TOR interaction motif (TIM).
- Site-directed mutagenesis to assess the functional role of TIM in Akt1 and PKCβII.
- In vitro kinase assays using purified components.
- Biophysical proximity assays and structural analysis to investigate PKC dimerization.
- Experiments in mTORC2-deficient cells and overexpression studies.
Main Results:
- A conserved mTOR-mediated phosphorylation site, TIM (F-x3-F-pT), was identified, which is invariant in mTORC2-dependent AGC kinases.
- Mutation of TIM abolished kinase activity by impairing activation loop and hydrophobic motif phosphorylation.
- mTORC2 directly phosphorylates the PKC TIM in vitro, a process observed in mouse brain.
- mTORC2 facilitates PDK1-mediated phosphorylation, enabling autophosphorylation, and relieves nascent PKC dimerization via TIM phosphorylation.
Conclusions:
- The discovery of TIM phosphorylation provides a new mechanism for AGC kinase regulation by mTORC2.
- mTORC2-mediated TIM phosphorylation is essential for recruiting PDK1 and initiating autophosphorylation, thereby controlling kinase activity.
- This finding offers insights into the regulation of PKC and Akt, with implications for understanding cellular signaling pathways.
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