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Updated: Nov 9, 2025

Assays for Validating Histone Acetyltransferase Inhibitors
Published on: August 6, 2020
Dual targeting of the epigenome via FACT complex and histone deacetylase is a potent treatment strategy for DIPG
Anahid Ehteda1, Sandy Simon1, Laura Franshaw1
1Children's Cancer Institute, Lowy Cancer Research Centre, University of New South Wales, Sydney, NSW, Australia.
Abstract:
Diffuse intrinsic pontine glioma (DIPG) is an aggressive and incurable childhood brain tumor for which new treatments are needed. CBL0137 is an anti-cancer compound developed from quinacrine that targets facilitates chromatin transcription (FACT), a chromatin remodeling complex involved in transcription, replication, and DNA repair. We show that CBL0137 displays profound cytotoxic activity against a panel of patient-derived DIPG cultures by restoring tumor suppressor TP53 and Rb activity. Moreover, in an orthotopic model of DIPG, treatment with CBL0137 significantly extends animal survival. The FACT subunit SPT16 is found to directly interact with H3.3K27M, and treatment with CBL0137 restores both histone H3 acetylation and trimethylation. Combined treatment of CBL0137 with the histone deacetylase inhibitor panobinostat leads to inhibition of the Rb/E2F1 pathway and induction of apoptosis. The combination of CBL0137 and panobinostat significantly prolongs the survival of mice bearing DIPG orthografts, suggesting a potential treatment strategy for DIPG.
Insights
CBL0137 shows significant effectiveness against diffuse intrinsic pontine glioma (DIPG) by restoring tumor suppressor activity and extending survival in preclinical models. Combining CBL0137 with panobinostat offers a promising new treatment strategy for this aggressive childhood brain tumor.
Area of Science:
- Pediatric Oncology
- Cancer Therapeutics
- Epigenetics
Background:
- Diffuse intrinsic pontine glioma (DIPG) is an aggressive, incurable childhood brain tumor necessitating novel therapeutic approaches.
- Existing treatments are limited, highlighting the urgent need for innovative strategies targeting DIPG's underlying molecular mechanisms.
Purpose of the Study:
- To evaluate the anti-cancer efficacy of CBL0137, a novel compound targeting the facilitates chromatin transcription (FACT) complex, in diffuse intrinsic pontine glioma (DIPG).
- To investigate the molecular mechanisms of CBL0137 action, including its effects on tumor suppressor pathways and histone modifications.
- To assess the therapeutic potential of combining CBL0137 with panobinostat, a histone deacetylase inhibitor, for DIPG treatment.
Main Methods:
- Cytotoxicity assays were performed on patient-derived DIPG cell cultures treated with CBL0137.
- In vivo efficacy was assessed using an orthotopic DIPG mouse model treated with CBL0137.
- Molecular analyses included Western blotting to examine protein activity (TP53, Rb), histone modifications (acetylation, trimethylation), and pathway inhibition (Rb/E2F1).
Main Results:
- CBL0137 demonstrated potent cytotoxic activity against DIPG cultures by restoring tumor suppressor TP53 and Rb activity.
- Treatment with CBL0137 significantly extended survival in mice with orthotopic DIPG.
- CBL0137 treatment restored histone H3 acetylation and trimethylation, with SPT16 interacting with H3.3K27M.
- Combined CBL0137 and panobinostat treatment inhibited the Rb/E2F1 pathway, induced apoptosis, and significantly prolonged survival in DIPG-bearing mice.
Conclusions:
- CBL0137 exhibits significant preclinical efficacy against diffuse intrinsic pontine glioma (DIPG) by targeting chromatin remodeling and restoring tumor suppressor function.
- The combination of CBL0137 and panobinostat presents a promising therapeutic strategy for DIPG, warranting further clinical investigation.
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