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Updated: Nov 9, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
It takes three to the DNA damage response tango
Sapir Schlam-Babayov1, Yael Ziv1, Yosef Shiloh1
1The David and Inez Myers Laboratory of Cancer Genetics, Department of Human Molecular Genetics and Biochemistry, Tel Aviv University School of Medicine, Tel Aviv, Israel.
Abstract:
The DNA damage response is robustly activated by DNA double-strand breaks and controlled by three apical protein kinases of the PI3-kinase-related protein kinase (PIKK) family: ataxia-telangiectasia, mutated (ATM), ataxia-telangiectasia and Rad3-related (ATR) and DNA-dependent protein kinase (DNA-PK). Phosphoproteomic analysis reveals the relative share of these PIKKs in coordinating this network, and compensation by ATR and DNA-PK for ATM absence in the genetic disorder, ataxia-telangiectasia (A-T).
Insights
The DNA damage response relies on three key kinases. ATR and DNA-PK compensate for ATM
Area of Science:
- Molecular Biology
- Cellular Biology
- Genetics
Background:
- The DNA damage response (DDR) is crucial for maintaining genomic stability.
- DNA double-strand breaks (DSBs) trigger a complex signaling network.
- Three PI3-kinase-related protein kinases (PIKKs) — ATM, ATR, and DNA-PK — are central regulators of the DDR.
Purpose of the Study:
- To elucidate the relative contributions of ATM, ATR, and DNA-PK in coordinating the DDR.
- To investigate the compensatory mechanisms involving ATR and DNA-PK in the absence of ATM, as observed in ataxia-telangiectasia (A-T).
Main Methods:
- Phosphoproteomic analysis was employed to quantify the activity and targets of PIKKs.
- Comparative analysis was performed in the presence and absence of ATM function.
Main Results:
- Phosphoproteomic data revealed the distinct roles and relative importance of ATM, ATR, and DNA-PK in the DDR network.
- The study demonstrated that ATR and DNA-PK can compensate for the loss of ATM function in cells from A-T patients.
Conclusions:
- ATM, ATR, and DNA-PK play coordinated yet distinct roles in the DDR.
- ATR and DNA-PK provide functional redundancy, compensating for ATM deficiency in A-T, thereby highlighting the robustness of the DDR network.
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