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Updated: Nov 8, 2025

Three-Dimensional Shape Modeling and Analysis of Brain Structures
Published on: November 14, 2019
A hybrid topological and shape-matching approach for structure analysis
Amrita Goswami1, Jayant K Singh1
1Department of Chemical Engineering, Indian Institute of Technology Kanpur, Kanpur 208016, India.
A new framework called Topological Unit Matching (TUM) accurately identifies crystalline structures and defects in materials like ice. This method improves the analysis of complex structures, including deformed ice polymorphs and phase transitions.
Area of Science:
- Materials Science
- Crystallography
- Condensed Matter Physics
Background:
- Crystalline and amorphous materials possess distinct long-range and local order.
- Deformations and defects are crucial in processes like plasticity, ice formation, and crystal growth.
- Topological network partitioning is a common method for classifying crystal structures, but fails for non-convex blocks.
Purpose of the Study:
- To introduce a novel framework, Topological Unit Matching (TUM), for efficient shape-matching and structural analysis.
- To develop a general algorithm capable of quantifying deformations and identifying crystal grains in various ice polymorphs.
- To improve the identification of complex ice structures, including quasi-one-dimensional ice and topological defects.
Main Methods:
- Development of the Topological Unit Matching (TUM) framework, leveraging topological criteria for shape matching.
- Application of TUM to quantify deformations and determine grains in bulk and confined ice polymorphs.
- Analysis of supercooled water nanoparticles, amorphous ice, and phase transitions in ice nanotubes.
Main Results:
- TUM provides an efficient shape-matching procedure, overcoming limitations of convex hull-based methods.
- The framework accurately quantifies deformations and identifies ice polymorphs, including quasi-one-dimensional ice with deformed prism blocks.
- TUM demonstrates superiority in resolving topological defect structures with minimal parameterization.
Conclusions:
- Topological Unit Matching (TUM) offers a robust and generalizable method for analyzing crystalline and amorphous materials.
- TUM significantly enhances the identification and characterization of complex ice structures and their defects.
- This framework has broad applicability in studying phase transitions and material properties under various conditions.
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