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A statistical framework for non-negative matrix factorization based on generalized dual divergence.

Karthik Devarajan1

  • 1Department of Biostatistics & Bioinformatics, Fox Chase Cancer Center, Temple University Health System, Philadelphia, PA 19111, United States of America.

Neural Networks : the Official Journal of the International Neural Network Society
|April 23, 2021
PubMed
Summary
This summary is machine-generated.

A new statistical framework for non-negative matrix factorization (NMF) using generalized dual Kullback-Leibler divergence is introduced. This approach offers a flexible alternative for various noise structures and applications, including cancer genomics.

Keywords:
-divergenceCancer genomicsDeep learningDual Kullback–Leibler divergenceNonnegative matrix factorizationUnsupervised learning

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Area of Science:

  • Machine Learning
  • Statistical Modeling
  • Data Analysis

Background:

  • Non-negative matrix factorization (NMF) is a widely used dimensionality reduction technique.
  • Existing NMF methods often rely on specific noise assumptions or divergences.
  • There is a need for more flexible and generalized NMF frameworks.

Purpose of the Study:

  • To propose a novel statistical framework for NMF based on generalized dual Kullback-Leibler divergence.
  • To develop a family of algorithms within this framework, including those with sparsity constraints.
  • To provide a generalized and adaptable NMF approach for diverse applications.

Main Methods:

  • Development of a statistical framework utilizing generalized dual Kullback-Leibler divergence.
  • Algorithm design incorporating sparsity constraints.
  • Convergence proofs using the Expectation-Maximization algorithm.
  • Introduction of a goodness-of-fit measure for NMF.

Main Results:

  • A generalized NMF framework accommodating exponential family models and various noise structures.
  • Convergence of developed algorithms proven via Expectation-Maximization.
  • Demonstrated utility in unsupervised and semi-supervised learning through cancer genomics application.
  • Performance validated on both simulated and real-world data.

Conclusions:

  • The proposed framework offers a valuable alternative to existing NMF methods.
  • The framework is adaptable to deep learning paradigms, including reinforcement learning and neural networks.
  • This generalized approach enhances NMF's applicability in complex data analysis, such as genomics.