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Related Concept Videos

Model Approaches for Pharmacokinetic Data: Physiological Models01:15

Model Approaches for Pharmacokinetic Data: Physiological Models

152
Physiological models in pharmacokinetics are instrumental in understanding the distribution and elimination of drugs within the body. These models describe the drug concentration within target organs, influenced by factors such as drug uptake, tissue volume, and blood flow. Drug uptake is governed by the partition coefficient, which signifies the drug concentration ratio in tissue to that in the blood. The blood flow rate to a specific tissue is expressed as Qt, and the rate of change in tissue...
152
Model Approaches for Pharmacokinetic Data: Distributed Parameter Models01:06

Model Approaches for Pharmacokinetic Data: Distributed Parameter Models

154
Pharmacokinetic models are mathematical constructs that represent and predict the time course of drug concentrations in the body, providing meaningful pharmacokinetic parameters. These models are categorized into compartment, physiological, and distributed parameter models.
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
154
Physiological Pharmacokinetic Models: Blood Flow-Limited Versus Diffusion-Limited Models00:57

Physiological Pharmacokinetic Models: Blood Flow-Limited Versus Diffusion-Limited Models

189
Physiological pharmacokinetic models, often called flow-limited or perfusion models, typically assume a swift drug distribution between tissue and venous blood, creating a rapid drug equilibrium. This premise is based on the idea that drug diffusion is extremely fast, and the cell membrane presents no barrier to drug permeation. In this scenario, where no drug binding occurs, the drug concentration in the tissue equals that of the venous blood leaving the tissue. This greatly simplifies the...
189
Model Approaches for Pharmacokinetic Data: Compartment Models01:14

Model Approaches for Pharmacokinetic Data: Compartment Models

324
Compartmental analysis is a widely adopted approach to characterizing drug pharmacokinetics. It uses compartment models that conceptualize the body as a collection of reversibly communicating compartments, each representing a group of tissues exhibiting similar drug distribution characteristics. The movement rate of the drug between these compartments is typically described by first-order kinetics.
Two primary types of compartment models are recognized: mammillary and catenary. The more...
324
Model-Independent Approaches for Pharmacokinetic Data: Noncompartmental Analysis00:59

Model-Independent Approaches for Pharmacokinetic Data: Noncompartmental Analysis

165
Noncompartmental analyses offer an alternative method for describing drug pharmacokinetics without relying on a specific compartmental model. In this approach, the drug's pharmacokinetics are assumed to be linear, with the terminal phase log-linear. This assumption allows for simplified analysis and interpretation of the drug's behavior in the body.
One important characteristic of noncompartmental analyses is that drug exposure increases proportionally with increasing doses. This...
165
Blood Studies for Cardiovascular System I: Cardiac Biomarkers01:20

Blood Studies for Cardiovascular System I: Cardiac Biomarkers

486
Cardiac biomarkers are enzymes, proteins, and hormones released into the blood when cardiac cells are injured. They are powerful tools for triaging.
The essential diagnostic tools for detecting myocardial necrosis and monitoring individuals suspected of having acute coronary syndrome (ACS) include:
Troponins
Troponins, particularly cardiac troponins I and T, are the most precise and sensitive markers of myocardial injury. They are detectable within 4-6 hours of myocardial injury and remain...
486

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In Silico Clinical Trials for Cardiovascular Disease
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Combining data assimilation and machine learning to build data-driven models for unknown long time

Francesco Regazzoni1,2,3, Dominique Chapelle2,3, Philippe Moireau2,3

  • 1MOX-Mathematics Department, Politecnico di Milano, Milano, Italy.

International Journal for Numerical Methods in Biomedical Engineering
|April 29, 2021
PubMed
Summary

We developed a novel method combining data assimilation and machine learning to discover differential equations for multiscale phenomena. This approach efficiently models complex dynamics from fast-scale data, improving interpretability and computational efficiency.

Keywords:
artificial neural networkscardiovascular modelingdata assimilationdata-driven modelingmachine learningmultiscale problems

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Area of Science:

  • Computational Mathematics
  • Dynamical Systems
  • Scientific Machine Learning

Background:

  • Modeling complex phenomena often involves multiscale dynamics, posing significant computational challenges.
  • Inferring governing differential equations from observational data is crucial for scientific understanding and prediction.
  • Existing methods struggle with the computational burden and interpretability of data-driven models for multiscale systems.

Purpose of the Study:

  • To develop a robust method for discovering differential equations that capture long-term dynamics of multiscale phenomena.
  • To leverage data assimilation and machine learning for efficient parameter estimation and law inference.
  • To address the interpretability challenges in data-driven differential equation discovery.

Main Methods:

  • A hybrid approach synergistically combining data assimilation (DA) for fast-scale parameter estimation and machine learning (ML) for slow-scale dynamics inference.
  • Exploitation of time-scale separation to decouple dynamics, significantly reducing computational complexity.
  • Development of an ML algorithm to learn parametric models from time series data and a strategy to ensure model interpretability.

Main Results:

  • Demonstrated effectiveness and noise-robustness in reconstructing differential models from generated time series data.
  • Successfully applied the method to a cardiovascular modeling test case, highlighting its practical applicability.
  • Showcased a strategy to select unique, interpretable models from infinite equivalent representations.

Conclusions:

  • The proposed DA-ML framework offers an efficient and interpretable approach to discovering differential equations for multiscale systems.
  • The method effectively handles noisy data and provides a pathway for understanding complex scientific phenomena.
  • This work opens promising avenues for applications in fields like biomedical engineering and systems biology.