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Updated: Nov 7, 2025

Clinicopathological Analysis of miRNA Expression in Breast Cancer Tissues by Using miRNA In Situ Hybridization
Published on: June 7, 2016
Clinical Identification of Dysregulated Circulating microRNAs and Their Implication in Drug Response in Triple
Amal Qattan1,2, Taher Al-Tweigeri3, Wafa Alkhayal4
1Breast Cancer Research, Department of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh 11211, Saudi Arabia.
Abstract:
Resistance to therapy is a persistent problem that leads to mortality in breast cancer, particularly triple-negative breast cancer (TNBC). MiRNAs have become a focus of investigation as tissue-specific regulators of gene networks related to drug resistance. Circulating miRNAs are readily accessible non-invasive potential biomarkers for TNBC diagnosis, prognosis, and drug-response. Our aim was to use systems biology, meta-analysis, and network approaches to delineate the drug resistance pathways and clinical outcomes associated with circulating miRNAs in TNBC patients. MiRNA expression analysis was used to investigate differentially regulated circulating miRNAs in TNBC patients, and integrated pathway regulation, gene ontology, and pharmacogenomic network analyses were used to identify target genes, miRNAs, and drug interaction networks. Herein, we identified significant differentially expressed circulating miRNAs in TNBC patients (miR-19a/b-3p, miR-25-3p, miR-22-3p, miR-210-3p, miR-93-5p, and miR-199a-3p) that regulate several molecular pathways (PAM (PI3K/Akt/mTOR), HIF-1, TNF, FoxO, Wnt, and JAK/STAT, PD-1/PD-L1 pathways and EGFR tyrosine kinase inhibitor resistance (TKIs)) involved in drug resistance. Through meta-analysis, we demonstrated an association of upregulated miR-93, miR-210, miR-19a, and miR-19b with poor overall survival outcomes in TNBC patients. These results identify miRNA-regulated mechanisms of drug resistance and potential targets for combination with chemotherapy to overcome drug resistance in TNBC. We demonstrate that integrated analysis of multi-dimensional data can unravel mechanisms of drug-resistance related to circulating miRNAs, particularly in TNBC. These circulating miRNAs may be useful as markers of drug response and resistance in the guidance of personalized medicine for TNBC.
Insights
Circulating microRNAs (miRNAs) are key regulators of drug resistance in triple-negative breast cancer (TNBC). Identifying these miRNAs offers potential for personalized medicine and improved treatment outcomes.
Area of Science:
- Oncology
- Molecular Biology
- Biomarkers
Background:
- Therapy resistance significantly contributes to mortality in breast cancer, especially triple-negative breast cancer (TNBC).
- MicroRNAs (miRNAs) are recognized as crucial regulators of gene networks involved in drug resistance.
- Circulating miRNAs show promise as non-invasive biomarkers for TNBC diagnosis, prognosis, and predicting drug response.
Purpose of the Study:
- To elucidate drug resistance pathways and clinical outcomes linked to circulating miRNAs in TNBC patients using systems biology and meta-analysis.
- To identify specific circulating miRNAs and their target genes/pathways implicated in TNBC drug resistance.
- To explore the potential of circulating miRNAs as predictive biomarkers for personalized medicine in TNBC.
Main Methods:
- MiRNA expression analysis to identify differentially regulated circulating miRNAs in TNBC.
- Integrated pathway analysis, gene ontology, and pharmacogenomic network analysis to map miRNA-target interactions.
- Meta-analysis to correlate miRNA expression with overall survival outcomes in TNBC patients.
Main Results:
- Six circulating miRNAs (miR-19a/b-3p, miR-25-3p, miR-22-3p, miR-210-3p, miR-93-5p, miR-199a-3p) were identified as significantly differentially expressed in TNBC.
- These miRNAs regulate key pathways involved in drug resistance, including PI3K/Akt/mTOR, HIF-1, TNF, FoxO, Wnt, JAK/STAT, PD-1/PD-L1, and EGFR tyrosine kinase inhibitor resistance.
- Upregulation of miR-93, miR-210, miR-19a, and miR-19b was associated with poorer overall survival in TNBC patients.
Conclusions:
- Circulating miRNAs play a significant role in regulating drug resistance mechanisms in TNBC.
- Specific circulating miRNAs can serve as potential biomarkers for predicting drug response and resistance.
- Integrated multi-dimensional data analysis is effective in uncovering miRNA-driven drug resistance mechanisms for personalized TNBC treatment strategies.
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