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Updated: Nov 7, 2025

Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Molecular Profiling-Based Assignment of Cancer Therapy (NCI-MPACT): A Randomized Multicenter Phase II Trial
Alice P Chen1, Shivaani Kummar1,2, Nancy Moore1
1Division of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, MD.
Abstract:
This trial assessed the utility of applying tumor DNA sequencing to treatment selection for patients with advanced, refractory cancer and somatic mutations in one of four signaling pathways by comparing the efficacy of four study regimens that were either matched to the patient's aberrant pathway (experimental arm) or not matched to that pathway (control arm).
Materials And Methods:
Adult patients with an actionable mutation of interest were randomly assigned 2:1 to receive either (1) a study regimen identified to target the aberrant pathway found in their tumor (veliparib with temozolomide or adavosertib with carboplatin [DNA repair pathway], everolimus [PI3K pathway], or trametinib [RAS/RAF/MEK pathway]), or (2) one of the same four regimens, but chosen from among those not targeting that pathway.
Results:
Among 49 patients treated in the experimental arm, the objective response rate was 2% (95% CI, 0% to 10.9%). One of 20 patients (5%) in the experimental trametinib cohort had a partial response. There were no responses in the other cohorts. Although patients and physicians were blinded to the sequencing and random assignment results, a higher pretreatment dropout rate was observed in the control arm (22%) compared with the experimental arm (6%; P = .038), suggesting that some patients may have had prior tumor mutation profiling performed that led to a lack of participation in the control arm.
Conclusion:
Further investigation, better annotation of predictive biomarkers, and the development of more effective agents are necessary to inform treatment decisions in an era of precision cancer medicine. Increasing prevalence of tumor mutation profiling and preference for targeted therapy make it difficult to use a randomized phase II design to evaluate targeted therapy efficacy in an advanced disease setting.
Insights
Tumor DNA sequencing did not improve treatment selection for advanced cancer patients. Targeted therapies require better biomarkers and more effective agents for precision medicine to succeed.
Area of Science:
- Oncology
- Genomics
- Precision Medicine
Background:
- Advanced, refractory cancers often harbor somatic mutations.
- Treatment selection for these patients is challenging.
- Tumor DNA sequencing offers potential for personalized therapy.
Purpose of the Study:
- To assess the utility of tumor DNA sequencing in guiding treatment selection for advanced cancer.
- To compare the efficacy of pathway-matched versus non-matched targeted therapies.
Main Methods:
- Adult patients with actionable mutations were randomized (2:1) to receive either pathway-matched or non-matched targeted regimens.
- Regimens targeted specific signaling pathways (DNA repair, PI3K, RAS/RAF/MEK).
- Patients and physicians were blinded to sequencing and randomization results.
Main Results:
- The overall objective response rate in the experimental arm was 2%.
- One partial response was observed in the trametinib cohort; no responses in other cohorts.
- A significantly higher dropout rate was noted in the control arm (22% vs 6%).
Conclusions:
- Current tumor DNA sequencing and targeted therapies have limitations in advanced cancer treatment selection.
- Further research is needed for better predictive biomarkers and more effective agents.
- Randomized phase II designs are difficult to implement for targeted therapy efficacy in advanced disease.
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