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Updated: Nov 6, 2025

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Single-Particle Cryo-EM Data Collection with Stage Tilt using Leginon
Published on: July 1, 2022
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Coma-corrected rapid single-particle cryo-EM data collection on the CRYO ARM 300
Rouslan G Efremov1, Annelore Stroobants1
1Center for Structural Biology, Vlaams Instituut voor Biotechnologie, Pleinlaan 2, 1050 Brussels, Belgium.
Summary
High-throughput single-particle cryogenic electron microscopy (cryo-EM) is now possible with the JEOL CRYO ARM 300. This method enables rapid collection of thousands of high-resolution images daily for protein structure determination.
Area of Science:
- Structural Biology
- Biophysics
- Microscopy
Background:
- Single-particle cryogenic electron microscopy (cryo-EM) is crucial for determining protein structures.
- Increased demand for high-resolution electron microscopes necessitates higher data collection throughput.
- Current methods require stage movement, limiting imaging speed.
Purpose of the Study:
- To characterize the optical properties of the JEOL CRYO ARM 300 under off-axis illumination.
- To evaluate the feasibility of high-throughput data collection using beam-image shifts and coma correction.
- To demonstrate rapid, automated acquisition of high-resolution cryo-EM data.
Main Methods:
- Characterization of JEOL CRYO ARM 300 optical properties with a K3 camera under off-axis illumination.
- Implementation of large beam-image shifts (up to 10 µm) combined with off-axis coma correction.
- Data collection on apoferritin using a rapid acquisition protocol.
Main Results:
- Efficient coma correction was achieved for beam-image shifts of at least 10 µm.
- Routine data collection throughput of 6000–9000 images per day was enabled.
- Apoferritin reconstruction achieved a resolution of 1.7 Å using the rapid data-collection procedure.
Conclusions:
- The JEOL CRYO ARM 300 facilitates high-throughput cryo-EM data collection through optimized optical performance.
- Large beam-image shifts and off-axis coma correction significantly increase imaging rates without compromising resolution.
- This technology enables rapid, automated acquisition of high-resolution cryo-EM micrographs for structural biology research.

