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Global Lipidomics Profiling by a High Resolution LC-MS Platform.

Thomas Züllig1, Martin Trötzmüller1, Harald C Köfeler2

  • 1Core Facility Mass Spectrometry, Medical University of Graz, Graz, Austria.

Methods in Molecular Biology (Clifton, N.J.)
|May 6, 2021
PubMed
Summary
This summary is machine-generated.

This study details a lipidomics protocol using high-resolution mass spectrometry for lipid identification. It covers extraction, Orbitrap mass spectrometry data acquisition, and analysis with open-source software.

Keywords:
ChromatographyLC-MSLipid data analyzerLipidomicsLipidsMass spectrometry

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Area of Science:

  • Biochemistry
  • Analytical Chemistry
  • Mass Spectrometry

Background:

  • Lipidomics involves characterizing lipid profiles using mass spectrometry.
  • Accurate lipid identification relies on mass, fragmentation, and retention time data.

Purpose of the Study:

  • To present a comprehensive protocol for lipidomics analysis.
  • To detail lipid extraction, LC-MS data acquisition, and data processing.

Main Methods:

  • Lipid extraction from biological samples.
  • Liquid chromatography coupled with high-resolution Orbitrap mass spectrometry (LC-MS).
  • Data processing using the open-source Lipid Data Analyzer software.

Main Results:

  • Successful identification of lipids based on exact mass, fragment spectra, and retention time.
  • Demonstration of a complete workflow from sample to analyzed data.

Conclusions:

  • The presented protocol enables robust lipid identification and quantification.
  • The open-source Lipid Data Analyzer facilitates efficient lipidomics data processing.