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Updated: Nov 6, 2025

Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
An Insight Into the Driver Mutations and Molecular Mechanisms Underlying Mucinous Adenocarcinoma of the Rectum
Ian S Reynolds1,2, Emer O'Connell1,2, Michael Fichtner2,3
1Department of Colorectal Surgery, Beaumont Hospital, Dublin, Ireland.
Background:
Mucinous adenocarcinoma of the rectum accounts for 10% of all rectal cancers and has an impaired response to neoadjuvant chemoradiotherapy and worse overall survival. To date, insufficient genomic research has been performed on this histological subtype.
Objective:
This study aims to define the mismatch repair deficiency rate and the driver mutations underpinning mucinous adenocarcinoma of the rectum and to compare it with rectal adenocarcinoma not otherwise specified.
Design:
Immunohistochemistry and sequencing were performed on tumor samples from our tumor biobank.
Settings:
This study was conducted across 2 tertiary referral centers.
Patients:
Patients with mucinous adenocarcinoma and rectal adenocarcinoma not otherwise specified who underwent rectal resection between 2008 and 2018 were included.
Main Outcome Measures:
Mismatch repair status was performed by immunohistochemical staining. Mutations in the panel of oncogenes and tumor suppressor genes were determined by sequencing on the MiSeq V3 platform.
Results:
The study included 33 patients with mucinous adenocarcinoma of the rectum and 100 patients with rectal adenocarcinoma not otherwise specified. Those with mucinous adenocarcinoma had a mismatch repair deficiency rate of 12.1% compared to 2.0% in the adenocarcinoma not otherwise specified cohort (p = 0.04). Mucinous adenocarcinoma and adenocarcinoma not otherwise specified rectal tumors had similar mutation frequencies in most oncogenes and tumor suppressor genes. No difference was found in the KRAS mutation rate (50.0% vs 37.1%, p = 0.29) or BRAF mutation rate (6.7% vs 3.1%, p = 0.34) between the cohorts. No difference was found between the cohorts regarding recurrence-free (p = 0.29) or overall survival (p = 0.14).
Limitations:
The major limitations of this study were the use of formalin-fixed, paraffin-embedded tissue over fresh-frozen tissue and the small number of patients included, in particular, in the mucinous rectal cohort.
Conclusions:
Most mucinous rectal tumors develop and progress along the chromosomal instability pathway. Further research in the form of transcriptomics, proteomics, and analysis of the effects of the mucin barrier may yield valuable insights into the mechanisms of resistance to chemoradiotherapy in this cohort. See Video Abstract at http://links.lww.com/DCR/B464.
Una Percepcin Sobre Mutaciones Impulsoras Y Mecanismos Moleculares Subyacentes Al Adenocarcinoma Mucinoso Del Recto:
ANTECEDENTES:El adenocarcinoma mucinoso del recto, representa el 10% de todos los cánceres rectales y tiene una respuesta deficiente a la quimioradioterapia neoadyuvante y una peor supervivencia en general. A la fecha, se han realizado muy pocas investigaciones genómicas sobre este subtipo histológico.OBJETIVO:Definir la tasa de deficiencia en la reparación de desajustes y mutaciones impulsoras, que sustentan el adenocarcinoma mucinoso del recto y compararlo con el adenocarcinoma rectal no especificado de otra manera.DISEÑO:Se realizaron inmunohistoquímica y secuenciación en muestras tumorales de nuestro biobanco de tumores.AJUSTE:El estudio se realizó en dos centros de referencia terciarios.PACIENTES:Se incluyeron pacientes con adenocarcinoma mucinoso y adenocarcinoma no especificado de otra manera, sometidos a resección rectal entre 2008 y 2018.PRINCIPALES MEDIDAS DE RESULTADO:El estado de reparación de desajustes se realizó mediante tinción inmunohistoquímica. Las mutaciones en el panel de oncogenes y genes supresores de tumores, se determinaron mediante secuenciación en la plataforma MiSeq V3.RESULTADOS:El estudio incluyó a 33 pacientes con adenocarcinoma mucinoso del recto y 100 pacientes con adenocarcinoma del recto no especificado de otra manera. Aquellos con adenocarcinoma mucinoso, tenían una tasa de deficiencia de reparación de desajustes del 12,1% en comparación con el 2,0% en la cohorte de adenocarcinoma no especificado de otra manera (p = 0,04). El adenocarcinoma mucinoso y el adenocarcinoma no especificado de otra manera, tuvieron frecuencias de mutación similares en la mayoría de los oncogenes y genes supresores de tumores. No se encontraron diferencias en la tasa de mutación de KRAS (50,0% frente a 37,1%, p = 0,29) o la tasa de mutación de BRAF (6,7% frente a 3,1%, p = 0,34) entre las cohortes. No se encontraron diferencias entre las cohortes con respecto a la supervivencia libre de recurrencia (p = 0,29) o la supervivencia global (p = 0,14).LIMITACIONES:Las mayores limitaciones de este estudio, fueron el uso de tejido embebido en parafina y fijado con formalina, sobre el tejido fresco congelado y el pequeño número de pacientes incluidos, particularmente en la cohorte mucinoso rectal.CONCLUSIONES:La mayoría de los tumores rectales mucinosos se desarrollan y progresan a lo largo de la vía de inestabilidad cromosómica. La investigación adicional en forma transcriptómica, proteómica y análisis de los efectos de la barrera de la mucina, puede proporcionar información valiosa sobre los mecanismos de resistencia a la quimioradioterapia, en esta cohorte. Consulte Video Resumen en http://links.lww.com/DCR/B464.
Insights
Mucinous rectal tumors show a higher rate of mismatch repair deficiency compared to other rectal adenocarcinomas. Further research into chromosomal instability and mucin barrier effects is needed for this subtype.
Area of Science:
- Oncology
- Genomics
- Molecular Biology
Background:
- Mucinous adenocarcinoma of the rectum constitutes 10% of rectal cancers, exhibiting poor response to neoadjuvant chemoradiotherapy and reduced overall survival.
- Limited genomic research exists for this specific histological subtype, necessitating further investigation.
Purpose of the Study:
- To determine the mismatch repair deficiency rate in mucinous rectal adenocarcinoma.
- To identify driver mutations in mucinous rectal adenocarcinoma.
- To compare these findings with rectal adenocarcinoma not otherwise specified (NOS).
Main Methods:
- Immunohistochemistry was used to assess mismatch repair status.
- Next-generation sequencing (MiSeq V3 platform) was employed to identify mutations in oncogenes and tumor suppressor genes.
- Tumor samples were analyzed from a biobank across two tertiary referral centers.
Main Results:
- The study included 33 mucinous rectal adenocarcinoma cases and 100 rectal adenocarcinoma NOS cases.
- A significantly higher mismatch repair deficiency rate was observed in mucinous adenocarcinoma (12.1%) compared to adenocarcinoma NOS (2.0%, p=0.04).
- Mutation frequencies for most oncogenes and tumor suppressor genes, including KRAS and BRAF, were similar between the two cohorts. No significant differences in recurrence-free or overall survival were noted.
Conclusions:
- Mucinous rectal tumors predominantly follow the chromosomal instability pathway.
- The mucin barrier may play a role in resistance to chemoradiotherapy.
- Further transcriptomic, proteomic, and mucin barrier analyses are recommended to understand resistance mechanisms.
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