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Related Concept Videos

Protein Organization01:24

Protein Organization

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Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
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Protein Families02:47

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Protein families are groups of homologous proteins; that is, they have similarities in amino acid sequences and three-dimensional structures. Protein families usually occur because of gene duplication, where an additional copy of a gene is inserted into the genome of an organism.   Mutations that change the amino acids but still allow the protein to be properly synthesized, will lead to new protein family members.   If these new proteins contain similar amino acids in key...
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Protein Networks02:26

Protein Networks

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An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web
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Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web

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Seeing the PDB.

Jane S Richardson1, David C Richardson1, David S Goodsell2

  • 1Department of Biochemistry, Duke University, Durham, North Carolina, USA.

The Journal of Biological Chemistry
|May 6, 2021
PubMed
Summary
This summary is machine-generated.

Structural biology visualization methods have evolved significantly since the 1960s. This review highlights key techniques for understanding protein and nucleic acid structures in the Protein Data Bank.

Area of Science:

  • Structural Biology
  • Biomolecular Visualization
  • Computational Biology

Background:

Keywords:
RNA structureX-ray crystallographyall-atom contactsmolecular graphicsprotein foldingprotein structureribbon drawingsscience education and outreachstructural biologyvisualization

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  • Since the 1960s, visualizing biomolecular structures has been crucial for research and public understanding.
  • The Protein Data Bank (PDB) has grown significantly, necessitating advanced visualization tools.
  • Effective visualization aids comprehension of complex macromolecular structures.