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MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After...
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MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
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Multi-view Multichannel Attention Graph Convolutional Network for miRNA-disease association prediction.

Xinru Tang1, Jiawei Luo1, Cong Shen1

  • 1College of Computer Science and Electronic Engineering, Hunan University, Changsha 410083, China.

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|May 8, 2021
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Summary

This study introduces a novel Multi-view Multichannel Attention Graph Convolutional Network (MMGCN) for predicting microRNA (miRNA) and disease associations. The MMGCN model demonstrates superior performance in identifying potential links between miRNAs and complex human diseases.

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deep learninggraph convolutional networksmiRNA–disease associationsmultiview

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Area of Science:

  • Genomics
  • Bioinformatics
  • Computational Biology

Background:

  • MicroRNAs (miRNAs) are crucial in human complex diseases.
  • Identifying miRNA-disease associations aids disease discovery and treatment.
  • Traditional experimental methods are time-consuming; computational approaches are needed.

Purpose of the Study:

  • To develop an advanced computational model for predicting potential miRNA-disease associations.
  • To leverage multisource data and attention mechanisms for improved accuracy.
  • To address challenges in accurately determining miRNA-disease links using diverse data.

Main Methods:

  • Development of a Multi-view Multichannel Attention Graph Convolutional Network (MMGCN).
  • Utilizing GCN encoders for miRNA and disease feature extraction across different similarity views.
  • Employing multichannel attention to adaptively weigh feature importance for enhanced representation learning.

Main Results:

  • MMGCN achieved superior performance compared to nine state-of-the-art methods on two datasets.
  • Demonstrated the effectiveness of the multichannel attention mechanism.
  • Validated the utility of multisource data for miRNA-disease association prediction.
  • Case studies confirmed the model's ability to discover novel associations.

Conclusions:

  • The MMGCN model offers a powerful and accurate approach for predicting miRNA-disease associations.
  • Multichannel attention and multisource data integration significantly enhance prediction accuracy.
  • The method holds promise for accelerating the discovery of new miRNA-disease relationships.