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Updated: Nov 6, 2025

Analysis of Microglia and Monocyte-derived Macrophages from the Central Nervous System by Flow Cytometry
Published on: June 22, 2017
Distinct Features of Brain-Resident Macrophages: Microglia and Non-Parenchymal Brain Macrophages
Eunju Lee1, Jun-Cheol Eo1, Changjun Lee1
1Department of Microbiology and Immunology, Institute for Immunology and Immunological Diseases, Brain Korea 21 Project for Medical Science, Yonsei University College of Medicine, Seoul 03722, Korea.
Abstract:
Tissue-resident macrophages play an important role in maintaining tissue homeostasis and innate immune defense against invading microbial pathogens. Brain-resident macrophages can be classified into microglia in the brain parenchyma and non-parenchymal brain macrophages, also known as central nervous system-associated or border-associated macrophages, in the brain-circulation interface. Microglia and non-parenchymal brain macrophages, including meningeal, perivascular, and choroid plexus macrophages, are mostly produced during embryonic development, and maintained their population by self-renewal. Microglia have gained much attention for their dual roles in the maintenance of brain homeostasis and the induction of neuroinflammation. In particular, diverse phenotypes of microglia have been increasingly identified under pathological conditions. Single-cell phenotypic analysis revealed that microglia are highly heterogenous and plastic, thus it is difficult to define the status of microglia as M1/M2 or resting/activated state due to complex nature of microglia. Meanwhile, physiological function of non-parenchymal brain macrophages remain to be fully demonstrated. In this review, we have summarized the origin and signatures of brain-resident macrophages and discussed the unique features of microglia, particularly, their phenotypic polarization, diversity of subtypes, and inflammasome responses related to neurodegenerative diseases.
Insights
Brain-resident macrophages, including microglia, are crucial for brain health and immunity. This review explores their origins, diverse roles, and complex responses in neurodegenerative diseases.
Area of Science:
- Neuroimmunology
- Cellular Biology
Background:
- Tissue-resident macrophages are vital for homeostasis and immunity.
- Brain-resident macrophages include microglia and non-parenchymal macrophages.
- Microglia have dual roles in brain homeostasis and neuroinflammation.
Purpose of the Study:
- To review the origin and signatures of brain-resident macrophages.
- To discuss the unique features and phenotypic polarization of microglia.
- To explore inflammasome responses in neurodegenerative diseases.
Main Methods:
- Literature review of origin and signatures.
- Analysis of microglia phenotypic polarization and subtypes.
- Discussion of inflammasome responses in disease contexts.
Main Results:
- Microglia are heterogeneous and plastic, challenging simple M1/M2 classification.
- Non-parenchymal brain macrophage functions require further elucidation.
- Diverse microglial subtypes and inflammasome activity are linked to neurodegeneration.
Conclusions:
- Brain-resident macrophages, especially microglia, are key players in neurological health and disease.
- Understanding microglial diversity and inflammasome pathways is crucial for neurodegenerative disease research.
- Further research is needed to fully define non-parenchymal macrophage roles.
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