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A Chromatin Immunoprecipitation Assay to Identify Novel NFAT2 Target Genes in Chronic Lymphocytic Leukemia
Published on: December 4, 2018
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NF-κB1 -94del/del ATTG polymorphic variant maintains CLL at an early, mildest stage.
Iwona Urbanowicz1, Dariusz Wołowiec2, Barbara Wysoczańska3
1Department of Clinical Chemistry, Department of Hematology, Wroclaw Medical University, Poland.
Summary
The NF-κB1 -94 del/del polymorphism increases chronic lymphocytic leukemia (CLL) risk but may also indicate a milder disease course. Increased wild-type alleles may correlate with disease progression.
Area of Science:
- Genetics and Cancer Biology
- Molecular Oncology
- Hematology
Background:
- Nuclear factor-kappa B (NF-κB) is crucial in cancer development, with specific promoter polymorphisms affecting gene expression.
- A four-base deletion (ATTG) in the NF-κB1 promoter (-94 position) influences mRNA stability and translation, potentially impacting cancer risk and progression.
- The NF-κB1 -94 ins/del ATTG polymorphism has not been previously studied in chronic lymphocytic leukemia (CLL).
Purpose of the Study:
- To investigate the NF-κB1 -94 ins/del ATTG polymorphism as a risk factor for CLL susceptibility.
- To assess the polymorphism's role in CLL progression and clinical manifestation based on Rai staging.
- To determine if rs28362491 influences CLL disease severity and progression dynamics.
Main Methods:
- Polymerase chain reaction (PCR) with labeled primers was used to genotype the NF-κB1 -94 ins/del ATTG polymorphism.
- Capillary electrophoresis was employed for precise genotyping of the polymorphism.
- The study analyzed 282 Polish individuals, including 156 patients diagnosed with CLL.
Main Results:
- Homozygosity for the del/del genotype of the NF-κB1 -94 polymorphism was significantly more frequent in CLL patients than controls (OR = 2.23, p = 0.02).
- Patients with the del/del genotype exhibited a more than twofold increased risk of developing CLL.
- Del/del homozygotes were more often diagnosed with early-stage disease (Rai 0), suggesting a less aggressive phenotype.
Conclusions:
- The NF-κB1 -94 del/del variant is associated with an elevated risk of CLL.
- Despite increased risk, the del/del genotype may be linked to maintaining the disease in an early, less severe stage.
- A higher frequency of wild-type (insertion) alleles for this polymorphism might correlate with increased CLL progression likelihood.

