Comparative transcriptomics reveal different mechanisms for hyphal growth across four plant-associated dimorphic

Teeratas Kijpornyongpan1, M Catherine Aime1

  • 1Department of Botany and Plant Pathology, Purdue University, 915 W State St, West Lafayette, IN 47907-2054, USA.

Insights

Fungal dimorphism mechanisms vary across species, even closely related ones. Comparative transcriptomics reveals conserved genes in energy, metabolism, and cytoskeleton, but highlights divergent pathways for hyphal growth.

Area of Science:

  • Mycology
  • Plant Pathology
  • Genomics

Background:

  • Fungal dimorphism, the ability to switch between yeast and hyphal forms, is crucial for pathogenicity in many fungi.
  • Ustilago maydis is a model organism for studying dimorphism, but its mechanisms may not apply universally to other dimorphic fungi.
  • Understanding conserved and divergent dimorphic pathways is essential for broader applications in fungal biology and disease control.

Purpose of the Study:

  • To investigate and compare the transcriptomic mechanisms underlying fungal dimorphism in two non-model smut fungi, Tilletiopsis washingtonensis and Meira miltonrushii.
  • To identify conserved genes and pathways involved in hyphal growth across diverse dimorphic fungal species.
  • To assess the correlation between phylogenetic relatedness and transcriptomic similarity in fungal dimorphism.

Main Methods:

  • Transcriptomic profiling of T. washingtonensis and M. miltonrushii during yeast and hyphal growth, induced by Tween40.
  • Comparative transcriptomics integrating data from Ustilago maydis and Ophiostoma novo-ulmi.
  • Bioinformatic analysis to identify commonly upregulated genes during hyphal growth and enriched functional categories.

Main Results:

  • Tilletiopsis washingtonensis exhibited the least transcriptomic similarity in dimorphic transition compared to other species, despite close phylogenetic relationships.
  • Conserved gene enrichment was observed in cell energy, amino acid metabolism, and cytoskeleton functions across the four species.
  • Only genes for cell end marker Tea4/TeaC and kinesin motor protein Kin3 were consistently upregulated in hyphal growth across all four species.

Conclusions:

  • Phylogenetic relatedness does not predict transcriptomic similarity in fungal dimorphism.
  • While core pathways like energy metabolism and cytoskeleton are conserved, specific mechanisms for dimorphic transition and hyphal growth diverge significantly among fungal species.
  • The findings underscore the need for species-specific investigations into fungal dimorphism and pathogenicity.

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