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Updated: Nov 5, 2025

A Semi-Automated and Reproducible Biological-Based Method to Quantify Calcium Deposition In Vitro
Published on: June 2, 2022
ALKBH1-demethylated DNA N6-methyladenine modification triggers vascular calcification via osteogenic reprogramming in
Liu Ouyang1,2, Xiaoyan Su3, Wenxin Li2
1Department of Cardiology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, China.
Insights
In chronic kidney disease (CKD), reduced leukocyte DNA N6-methyladenine (6mA) correlates with vascular calcification (VC). ALKBH1 upregulation drives VC by promoting osteogenic reprogramming via Oct4 and BMP2.
Area of Science:
- Molecular Biology
- Nephrology
- Cardiovascular Research
Background:
- Vascular calcification (VC) is a significant predictor of cardiovascular morbidity and mortality in chronic kidney disease (CKD).
- The precise molecular mechanisms underlying VC in CKD remain incompletely understood.
- Leukocyte DNA N6-methyladenine (6mA) levels have not been previously investigated in relation to VC severity in CKD patients.
Purpose of the Study:
- To investigate the role of leukocyte DNA N6-methyladenine (6mA) modifications in vascular calcification (VC) among patients with chronic kidney disease (CKD).
- To elucidate the mechanistic link between ALKBH1, DNA 6mA demethylation, and the osteogenic reprogramming of vascular smooth muscle cells (VSMCs) in VC.
- To evaluate ALKBH1 as a potential therapeutic target for mitigating VC in CKD.
Main Methods:
- Detection of leukocyte DNA N6-methyladenine (6mA) levels in CKD patients with varying degrees of aortic arch calcification.
- Utilizing vascular smooth muscle cell-targeted (VSMC-targeted) adeno-associated virus (AAV) vectors encoding Alkbh1 gene or Alkbh1 shRNA in CKD mouse models to assess VC.
- In vitro and in vivo experiments to evaluate the impact of ALKBH1 overexpression or depletion on VC progression and VSMC osteogenic reprogramming, including assessment of BMP2 and Oct4 involvement.
Main Results:
- Leukocyte 6mA levels were significantly decreased with increasing severity of VC in CKD patients.
- Upregulation of ALKBH1 was associated with decreased 6mA demethylation.
- ALKBH1 overexpression exacerbated VC and osteogenic reprogramming, while its depletion attenuated these processes in vitro and in vivo.
- ALKBH1-mediated DNA 6mA demethylation facilitated Oct4 binding to the BMP2 promoter, activating BMP2 transcription and promoting VSMC osteogenic reprogramming.
- Depletion of either BMP2 or Oct4 mitigated the pro-calcifying effects of ALKBH1.
Conclusions:
- Reduced leukocyte DNA 6mA is a potential biomarker for vascular calcification severity in CKD.
- ALKBH1 plays a critical role in promoting VC in CKD by driving VSMC osteogenic reprogramming through the Oct4/BMP2 pathway.
- Targeting ALKBH1 presents a promising therapeutic strategy for reducing the burden of vascular calcification in CKD patients.
Abstract:
Vascular calcification (VC) predicts cardiovascular morbidity and mortality in chronic kidney disease (CKD). To date, the underlying mechanisms remain unclear. We detected leukocyte DNA N6-methyladenine (6mA) levels in patients with CKD with or without aortic arch calcification. We used arteries from CKD mice infected with vascular smooth muscle cell-targeted (VSMC-targeted) adeno-associated virus encoding alkB homolog 1 (Alkbh1) gene or Alkbh1 shRNA to evaluate features of calcification. We identified that leukocyte 6mA levels were significantly reduced as the severity of VC increased in patients with CKD. Decreased 6mA demethylation resulted from the upregulation of ALKBH1. Here, ALKBH1 overexpression aggravated whereas its depletion blunted VC progression and osteogenic reprogramming in vivo and in vitro. Mechanistically, ALKBH1-demethylated DNA 6mA modification could facilitate the binding of octamer-binding transcription factor 4 (Oct4) to bone morphogenetic protein 2 (BMP2) promoter and activate BMP2 transcription. This resulted in osteogenic reprogramming of VSMCs and subsequent VC progression. Either BMP2 or Oct4 depletion alleviated the procalcifying effects of ALKBH1. This suggests that targeting ALKBH1 might be a therapeutic method to reduce the burden of VC in CKD.
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