Epigenetic regulation of intestinal peptide transporter PEPT1 as a potential strategy for colorectal cancer sensitization
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Updated: Nov 4, 2025

In vitro Organoid Culture of Primary Mouse Colon Tumors
Published on: May 17, 2013
Yanhong Wang1, Jiaqi Wang1, Lingrong Yang2
1Institute of Drug Metabolism and Pharmaceutical Analysis, Zhejiang Province Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, 310058, Hangzhou, China.
Abstract:
Human intestinal peptide transporter PEPT1 is commonly repressed in human colorectal cancer (CRC), yet its relationship with sensitivity to the common CRC treatment ubenimex has not previously been elucidated. In this study, we confirmed PEPT1 suppression in CRC using real-time quantitative polymerase chain reaction and western blotting and then investigated the underlying epigenetic pathways involved using bisulfite sequencing, chromatin immunoprecipitation, siRNA knockdown, and reporter gene assays. We found that PEPT1 transcriptional repression was due to both DNMT1-mediated DNA methylation of the proximal promoter region and HDAC1-mediated histone deacetylation, which blocked P300-mediated H3K18/27Ac at the PEPT1 distal promoter. Finally, the effects of the epigenetic activation of PEPT1 on the CRC response to ubenimex were evaluated using sequential combination therapy of decitabine and ubenimex both in vitro and in xenografts. In conclusion, epigenetic silencing of PEPT1 due to increased DNMT1 and HDAC1 expression plays a vital role in the poor response of CRC to ubenimex.
Insights
Colorectal cancer (CRC) often represses the human intestinal peptide transporter PEPT1. Epigenetic silencing by DNMT1 and HDAC1 contributes to poor response to ubenimex treatment in CRC.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Human intestinal peptide transporter PEPT1 is frequently repressed in colorectal cancer (CRC).
- The link between PEPT1 expression and sensitivity to ubenimex, a common CRC treatment, remains unclear.
- Understanding PEPT1 regulation is crucial for improving CRC therapy.
Purpose of the Study:
- To confirm PEPT1 suppression in CRC and investigate the epigenetic mechanisms driving this repression.
- To explore the role of epigenetic PEPT1 activation in enhancing CRC response to ubenimex.
- To evaluate the efficacy of combined decitabine and ubenimex therapy in CRC models.
Main Methods:
- Real-time quantitative polymerase chain reaction and western blotting to assess PEPT1 levels.
- Bisulfite sequencing, chromatin immunoprecipitation, siRNA knockdown, and reporter gene assays to study epigenetic regulation.
- In vitro and xenograft models to evaluate combination therapy effects.
Main Results:
- PEPT1 suppression was confirmed in CRC.
- DNMT1-mediated DNA methylation and HDAC1-mediated histone deacetylation were identified as key mechanisms for PEPT1 repression.
- Epigenetic activation of PEPT1, through sequential decitabine and ubenimex therapy, improved CRC response.
- Increased DNMT1 and HDAC1 expression correlated with poor ubenimex response.
Conclusions:
- Epigenetic silencing of PEPT1, driven by elevated DNMT1 and HDAC1, significantly impairs CRC sensitivity to ubenimex.
- Targeting these epigenetic pathways offers a potential strategy to overcome ubenimex resistance in CRC.
- Combination therapy with epigenetic modifiers and ubenimex shows promise for CRC treatment.
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