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Optimising a Simple Fully Convolutional Network for Accurate Brain Age Prediction in the PAC 2019 Challenge.

Weikang Gong1, Christian F Beckmann1,2, Andrea Vedaldi3

  • 1Wellcome Centre for Integrative Neuroimaging (WIN Centre for Functional MRI of the Brain), University of Oxford, Oxford, United Kingdom.

Frontiers in Psychiatry
|May 27, 2021
PubMed
Summary

Brain age prediction using MRI scans helps model brain aging. Our deep learning model won the Predictive Analysis Challenge 2019 with high accuracy in predicting brain age, demonstrating its effectiveness.

Keywords:
big databrain age predictionbrain imagingconvolution neural networkdeep learningpredictive analysis

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Area of Science:

  • Neuroimaging
  • Artificial Intelligence
  • Biomarker Discovery

Background:

  • Brain age prediction from MRI scans is crucial for understanding brain aging.
  • Brain-age delta serves as a significant biomarker for brain health.
  • The Predictive Analysis Challenge 2019 focused on age prediction from multicentre T1-weighted brain MRIs.

Purpose of the Study:

  • To develop and report brain age prediction models for the Predictive Analysis Challenge 2019.
  • To evaluate the performance of a Simple Fully Convolutional Neural Network (SFCN) for brain age prediction.
  • To assess the utility of various techniques like data augmentation, transfer learning, and bias correction.

Main Methods:

  • Utilized a lightweight deep convolutional neural network architecture, Simple Fully Convolutional Neural Network (SFCN).
  • Implemented data augmentation, transfer learning, model ensemble, and bias correction techniques.
  • Applied the model to multicentre T1-weighted brain MRI datasets.

Main Results:

  • Achieved first place in the Predictive Analysis Challenge 2019 for brain age prediction.
  • Obtained a Mean Absolute Error (MAE) of 2.90 years without bias removal.
  • Achieved an MAE of 2.95 years with bias removal, outperforming competitors significantly.

Conclusions:

  • The developed SFCN model demonstrates high accuracy and effectiveness in brain age prediction.
  • The combination of deep learning and specific techniques provides a robust approach for neuroimaging analysis.
  • The model's performance establishes a new benchmark for predictive analysis in brain aging research.