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Plant Lipid Databases.

Peter Dörmann1

  • 1IMBIO Institut, Universität Bonn, Bonn, Nordrhein-Westfalen, Germany. doermann@uni-bonn.de.

Methods in Molecular Biology (Clifton, N.J.)
|May 28, 2021
PubMed
Summary

This chapter reviews plant lipid databases, detailing their information on lipid nomenclature, structures, properties, and analysis methods. It highlights resources for lipidomic data, mass spectra, and literature references.

Area of Science:

  • Biochemistry
  • Bioinformatics

Background:

  • Growing knowledge of lipid metabolism has led to the development of web-based lipid databases.
  • These databases are crucial for organizing and accessing complex biological information.

Purpose of the Study:

  • To provide an overview of plant lipid databases.
  • To focus on databases covering simple and complex lipids, including nomenclature, structures, and properties.
  • To introduce resources for lipid analysis methods and lipidomic procedures.

Main Methods:

  • Review of existing web-based plant lipid databases.
  • Analysis of database content regarding lipid information and associated data.
  • Description of lipidomic analysis techniques and data integration.
Keywords:
DatabaseLibraryLipidomicsMass spectrometryStructures

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Main Results:

  • Multiple plant lipid databases exist, offering comprehensive data on lipid nomenclature, structures, and physicochemical properties.
  • Databases include protocols for lipid isolation, fractionation, and analysis, supporting lipidomics.
  • Specialized databases incorporate mass spectrometry data (GC-MS, LC-MS, LC-MS/MS) and literature references.

Conclusions:

  • Plant lipid databases are valuable resources for researchers in lipid metabolism and plant science.
  • These databases facilitate access to diverse lipid information, analytical methods, and experimental data.
  • Effective utilization of these databases aids in advancing lipidomic research.