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Updated: Nov 4, 2025

A Protocol for Explant Cultures of IDH1-mutant Diffuse Low-grade Gliomas
Published on: May 9, 2025
Predictive Role of the Apparent Diffusion Coefficient and MRI Morphologic Features on IDH Status in Patients With
Jun Zhang1,2,3, Hong Peng1,2, Yu-Lin Wang2
1The Medical School of Chinese People's Liberation Army (PLA) General Hospital, Beijing, China.
Purpose:
To evaluate isocitrate dehydrogenase (IDH) status in clinically diagnosed grade II~IV glioma patients using the 2016 World Health Organization (WHO) classification based on MRI parameters.
Materials And Methods:
One hundred and seventy-six patients with confirmed WHO grade II~IV glioma were retrospectively investigated as the study set, including lower-grade glioma (WHO grade II, n = 64; WHO grade III, n = 38) and glioblastoma (WHO grade IV, n = 74). The minimum apparent diffusion coefficient (ADCmin) in the tumor and the contralateral normal-appearing white matter (ADCn) and the rADC (ADCmin to ADCn ratio) were defined and calculated. Intraclass correlation coefficient (ICC) analysis was carried out to evaluate interobserver and intraobserver agreement for the ADC measurements. Interobserver agreement for the morphologic categories was evaluated by Cohen's kappa analysis. The nonparametric Kruskal-Wallis test was used to determine whether the ADC measurements and glioma subtypes were related. By univariable analysis, if the differences in a variable were significant (P<0.05) or an image feature had high consistency (ICC >0.8; κ >0.6), then it was chosen as a predictor variable. The performance of the area under the receiver operating characteristic curve (AUC) was evaluated using several machine learning models, including logistic regression, support vector machine, Naive Bayes and Ensemble. Five evaluation indicators were adopted to compare the models. The optimal model was developed as the final model to predict IDH status in 40 patients with glioma as the subsequent test set. DeLong analysis was used to compare significant differences in the AUCs.
Results:
In the study set, six measured variables (rADC, age, enhancement, calcification, hemorrhage, and cystic change) were selected for the machine learning model. Logistic regression had better performance than other models. Two predictive models, model 1 (including all predictor variables) and model 2 (excluding calcification), correctly classified IDH status with an AUC of 0.897 and 0.890, respectively. The test set performed equally well in prediction, indicating the effectiveness of the trained classifier. The subgroup analysis revealed that the model predicted IDH status of LGG and GBM with accuracy of 84.3% (AUC = 0.873) and 85.1% (AUC = 0.862) in the study set, and with the accuracy of 70.0% (AUC = 0.762) and 70.0% (AUC = 0.833) in the test set, respectively.
Conclusion:
Through the use of machine-learning algorithms, the accurate prediction of IDH-mutant versus IDH-wildtype was achieved for adult diffuse gliomas via noninvasive MR imaging characteristics, including ADC values and tumor morphologic features, which are considered widely available in most clinical workstations.
Insights
Machine learning accurately predicts isocitrate dehydrogenase (IDH) status in gliomas using MRI. This noninvasive approach aids in classifying IDH-mutant versus IDH-wildtype gliomas, improving diagnostic capabilities.
Area of Science:
- Neuro-oncology
- Radiology
- Machine Learning in Medicine
Background:
- Isocitrate dehydrogenase (IDH) status is crucial for glioma classification and prognosis.
- Accurate IDH status determination is essential for guiding treatment strategies in glioma patients.
- Current methods for IDH status determination can be invasive.
Purpose of the Study:
- To evaluate the ability of magnetic resonance imaging (MRI) parameters to predict isocitrate dehydrogenase (IDH) status in glioma patients.
- To utilize machine learning algorithms for noninvasive IDH status prediction in gliomas.
- To correlate MRI-derived features with IDH mutation status in World Health Organization (WHO) grades II-IV gliomas.
Main Methods:
- Retrospective analysis of 176 glioma patients (WHO grades II-IV).
- Calculation of apparent diffusion coefficient (ADC) values (ADCmin, ADCn, rADC) from MRI.
- Application of machine learning models (logistic regression, SVM, Naive Bayes, Ensemble) to predict IDH status using ADC values and tumor morphologic features.
- Validation of predictive models on a separate test set.
Main Results:
- Six variables (rADC, age, enhancement, calcification, hemorrhage, cystic change) were selected for the machine learning model.
- Logistic regression model achieved an Area Under the Curve (AUC) of 0.897 for predicting IDH status.
- The models demonstrated effectiveness in predicting IDH status for both lower-grade gliomas (LGG) and glioblastoma (GBM).
- The trained classifier showed consistent performance on the test set.
Conclusions:
- Machine learning algorithms can accurately predict IDH-mutant versus IDH-wildtype status in adult diffuse gliomas noninvasively.
- MRI characteristics, including ADC values and tumor morphologic features, are valuable predictors of IDH status.
- This noninvasive approach offers a promising tool for glioma classification and management.

