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Published on: April 25, 2022
Cancer-Associated circRNA-miRNA-mRNA Regulatory Networks: A Meta-Analysis
Shaheerah Khan1,2, Atimukta Jha1,3, Amaresh C Panda1
1Institute of Life Sciences, Bhubaneswar, India.
Abstract:
Recent advances in sequencing technologies and the discovery of non-coding RNAs (ncRNAs) have provided new insights in the molecular pathogenesis of cancers. Several studies have implicated the role of ncRNAs, including microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and recently discovered circular RNAs (circRNAs) in tumorigenesis and metastasis. Unlike linear RNAs, circRNAs are highly stable and closed-loop RNA molecules. It has been established that circRNAs regulate gene expression by controlling the functions of miRNAs and RNA-binding protein (RBP) or by translating into proteins. The circRNA-miRNA-mRNA regulatory axis is associated with human diseases, such as cancers, Alzheimer's disease, and diabetes. In this study, we explored the interaction among circRNAs, miRNAs, and their target genes in various cancers using state-of-the-art bioinformatics tools. We identified differentially expressed circRNAs, miRNAs, and mRNAs on multiple cancers from publicly available data. Furthermore, we identified many crucial drivers and tumor suppressor genes in the circRNA-miRNA-mRNA regulatory axis in various cancers. Together, this study data provide a deeper understanding of the circRNA-miRNA-mRNA regulatory mechanisms in cancers.
Insights
Circular RNAs (circRNAs) play a key role in cancer development by regulating gene expression through microRNAs (miRNAs). This study identifies crucial circRNA-miRNA-mRNA interactions driving various cancers.
Area of Science:
- Molecular Biology
- Genomics
- Cancer Research
Background:
- Non-coding RNAs (ncRNAs), including microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and circular RNAs (circRNAs), are increasingly recognized for their roles in cancer.
- Circular RNAs (circRNAs) are stable, closed-loop molecules that regulate gene expression by interacting with miRNAs and RNA-binding proteins (RBPs) or by translating into proteins.
Purpose of the Study:
- To investigate the interactions among circRNAs, miRNAs, and their target messenger RNAs (mRNAs) in various cancers.
- To identify key regulatory elements within the circRNA-miRNA-mRNA axis that contribute to tumorigenesis and metastasis.
Main Methods:
- Utilized advanced bioinformatics tools to analyze publicly available cancer genomic data.
- Identified differentially expressed circRNAs, miRNAs, and mRNAs across multiple cancer types.
Main Results:
- Discovered numerous critical driver and tumor suppressor genes involved in the circRNA-miRNA-mRNA regulatory network.
- Established specific circRNA-miRNA-mRNA axes implicated in the pathogenesis of various cancers.
Conclusions:
- The findings provide a comprehensive understanding of circRNA-miRNA-mRNA regulatory mechanisms in cancer.
- Highlights the potential of targeting these interactions for cancer diagnostics and therapeutics.
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