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Updated: Nov 3, 2025

Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
The functional characterization of phosphorylation of tristetraprolin at C-terminal NOT1-binding domain
Hsin-Hui Hsieh1, Yen-An Chen1, Yao-Jen Chang2
1Graduate Institute of Biochemical Sciences, College of Life Science, National Taiwan University, No. 1 Sec 4 Roosevelt Rd, Taipei, 106, Taiwan.
Background:
Tristetraprolin (TTP) family proteins contain conserved tandem CCCH zinc-finger binding to AU-rich elements and C-terminal NOT1-binding domain. TTP is phosphorylated extensively in cells, and its mRNA destabilization activity is regulated by protein phosphorylation.
Methods:
We generated an antibody against phospho-Serine316 located at the C-terminal NOT1-binding site and examined TTP phosphorylation in LPS-stimulated RAW264.7 cells. Knockout of TTP was created in RAW264.7 cells using CRISPR/Cas9 gene editing to explore TTP functions.
Results:
We demonstrated that Ser316 was phosphorylated by p90 ribosomal S6 kinase 1 (RSK1) and p38-activated protein kinase (MK2) and dephosphorylated by Protein Phosphatase 2A (PP2A). A phosphorylation-mimic mutant of S316D resulted in dissociation with the CCR4-NOT deadenylase complex through weakening interaction with CNOT1. Furthermore, Ser316 and serines 52 and 178 were independently contributed to the CCR4-NOT complex recruitment in the immunoprecipitation assay using phosphor-mimic mutants. In RAW264.7 macrophages, TTP was induced, and Ser316 was phosphorylated through RSK1 and MK2 by LPS stimulation. Knockout of TTP resulted in TNFα mRNA increased due to mRNA stabilization. Overexpression of non-phosphorylated S316A TTP mutant can restore TTP activity and lead to TNFα mRNA decreased. GST pull-down and RNA pull-down analyses demonstrated that endogenous TTP with Ser316 phosphorylation decreased the interaction with CNOT1.
Conclusions:
Our results suggest that the TTP-mediated mRNA stability is modulated by Ser316 phosphorylation via regulating the TTP interaction with the CCR4-NOT deadenylase complex.
Insights
Tristetraprolin (TTP) phosphorylation at Serine316 regulates its interaction with the CCR4-NOT deadenylase complex, controlling mRNA stability. This finding reveals a key mechanism for modulating gene expression via TTP phosphorylation.
Area of Science:
- Molecular Biology
- Gene Regulation
- Protein Phosphorylation
Background:
- Tristetraprolin (TTP) proteins bind AU-rich elements and regulate mRNA destabilization.
- TTP's activity is modulated by extensive cellular phosphorylation.
- The C-terminal NOT1-binding domain is crucial for TTP function.
Purpose of the Study:
- To investigate the role of TTP phosphorylation at Serine316 in regulating mRNA stability.
- To identify the kinases and phosphatases involved in TTP Ser316 phosphorylation.
- To explore the functional consequences of TTP phosphorylation on the CCR4-NOT deadenylase complex interaction.
Main Methods:
- Generated an antibody against phospho-Serine316 TTP.
- Examined TTP phosphorylation in LPS-stimulated RAW264.7 cells.
- Utilized CRISPR/Cas9 to create TTP knockout RAW264.7 cells.
- Created phosphorylation-mimic and non-phosphorylated TTP mutants (S316D, S316A).
- Performed immunoprecipitation, GST pull-down, and RNA pull-down assays.
Main Results:
- Serine316 phosphorylation is mediated by RSK1 and MK2 and reversed by PP2A.
- Phosphorylation at Ser316 weakens TTP interaction with CNOT1 and dissociates it from the CCR4-NOT complex.
- TTP knockout cells showed increased TNFα mRNA stability.
- Overexpression of non-phosphorylated S316A TTP restored TTP activity, decreasing TNFα mRNA.
- Phosphorylation at Ser316, Ser52, and Ser178 independently contribute to CCR4-NOT complex recruitment.
Conclusions:
- Serine316 phosphorylation modulates TTP-mediated mRNA stability by regulating TTP interaction with the CCR4-NOT deadenylase complex.
- This phosphorylation event serves as a critical switch for controlling gene expression through mRNA decay pathways.
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