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Desthiobiotin-Streptavidin-Affinity Mediated Purification of RNA-Interacting Proteins in Mesothelioma Cells
Published on: April 25, 2018
The RNA-binding protein HuR is a novel target of Pirh2 E3 ubiquitin ligase
Alexandra Daks1, Alexey Petukhov2,3, Olga Fedorova2
1Institute of Cytology, Russian Academy of Sciences, 194064, St Petersburg, Russian Federation. alexandra.daks@gmail.com.
Abstract:
The RING-finger protein Pirh2 is a p53 family-specific E3 ubiquitin ligase. Pirh2 also ubiquitinates several other important cellular factors and is involved in carcinogenesis. However, its functional role in other cellular processes is poorly understood. To address this question, we performed a proteomic search for novel interacting partners of Pirh2. Using the GST-pulldown approach combined with LC-MS/MS, we revealed 225 proteins that interacted with Pirh2. We found that, according to the GO description, a large group of Pirh2-associated proteins belonged to the RNA metabolism group. Importantly, one of the identified proteins from that group was an RNA-binding protein ELAVL1 (HuR), which is involved in the regulation of splicing and protein stability of several oncogenic proteins. We demonstrated that Pirh2 ubiquitinated the HuR protein facilitating its proteasome-mediated degradation in cells. Importantly, the Pirh2-mediated degradation of HuR occurred in response to heat shock, thereby affecting the survival rate of HeLa cells under elevated temperature. Functionally, Pirh2-mediated degradation of HuR augmented the level of c-Myc expression, whose RNA level is otherwise attenuated by HuR. Taken together, our data indicate that HuR is a new target of Pirh2 and this functional interaction contributes to the heat-shock response of cancer cells affecting their survival.
Insights
Pirh2 E3 ubiquitin ligase targets the RNA-binding protein HuR for degradation, impacting cancer cell survival during heat shock. This uncovers a new role for Pirh2 in cellular stress responses.
Area of Science:
- Molecular Biology
- Cancer Research
- Cellular Stress Response
Background:
- Pirh2 (RING-finger protein Pirh2) is an E3 ubiquitin ligase involved in carcinogenesis.
- Its broader functional roles beyond p53 ubiquitination are not well understood.
Purpose of the Study:
- To identify novel Pirh2 interacting partners.
- To elucidate the functional role of Pirh2 in cellular processes, particularly in response to stress.
Main Methods:
- Proteomic analysis using GST-pulldown and LC-MS/MS to identify Pirh2 interacting proteins.
- Demonstration of Pirh2-mediated ubiquitination and degradation of ELAVL1 (HuR).
- Assessment of cell survival under heat shock and c-Myc expression levels.
Main Results:
- Identified 225 Pirh2-interacting proteins, with a significant number involved in RNA metabolism.
- ELAVL1 (HuR), an RNA-binding protein, was identified as a novel Pirh2 interactor.
- Pirh2 ubiquitinates and promotes proteasomal degradation of HuR, particularly under heat shock conditions.
- Pirh2-mediated HuR degradation leads to increased c-Myc expression and affects cancer cell survival during heat stress.
Conclusions:
- HuR is a novel substrate of Pirh2, highlighting a new regulatory pathway.
- The Pirh2-HuR interaction plays a critical role in the heat-shock response of cancer cells.
- This interaction influences cancer cell survival by modulating c-Myc expression.
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