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Updated: Nov 3, 2025

Excitation-Scanning Hyperspectral Imaging Microscopy to Efficiently Discriminate Fluorescence Signals
Published on: August 22, 2019
Demystifying autofluorescence with excitation-scanning hyperspectral imaging
Joshua Deal1,2,3, Bradley Harris4, Will Martin4
1Department of Chemical and Biomolecular Engineering, University of South Alabama.
Autofluorescence, often a nuisance in medical imaging, can now be utilized for diagnostics. Hyperspectral imaging with excitation-scanning detects pathology-specific changes in endogenous fluorophores, enabling new diagnostic approaches.
Area of Science:
- Biomedical Optics
- Medical Imaging
- Spectroscopy
Background:
- Autofluorescence from endogenous molecules (collagen, elastin, NADH, FAD) historically hinders medical imaging.
- These autofluorescent signals can obscure diagnostically relevant signals.
- Advances in hyperspectral imaging enable faster data acquisition and improved signal-to-noise ratios.
Purpose of the Study:
- To investigate the utility of excitation-scanning hyperspectral imaging for analyzing tissue autofluorescence.
- To differentiate and quantify endogenous fluorophores for pathological diagnosis.
- To explore pathology-specific alterations in endogenous fluorophore concentrations.
Main Methods:
- Utilized excitation-scanning hyperspectral imaging with a custom microscope and tunable filter array.
- Acquired spectra across excitation wavelengths from 360 nm to 550 nm in 5 nm increments.
- Analyzed hyperspectral image stacks using linear spectral unmixing (LSU) and principal component analysis (PCA).
Main Results:
- Successfully separated signals from endogenous fluorophores in tissue samples.
- Quantified relative concentrations of fluorophores in healthy versus diseased tissues.
- Demonstrated the potential to detect pathology-specific changes in autofluorescence.
Conclusions:
- Excitation-scanning hyperspectral imaging can effectively utilize autofluorescence for tissue examination and disease diagnosis.
- Pathology-specific changes in endogenous fluorophores are detectable using this advanced imaging technique.
- Future work will expand the molecular library and investigate more defined disease states.
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