Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Synthetic Biology02:55

Synthetic Biology

5.1K
Synthetic biology is an interdisciplinary science that involves using principles from disciplines such as engineering, molecular biology, cell biology, and systems biology. It involves remodeling existing organisms from nature or constructing completely new synthetic organisms for applications such as protein or enzyme production, bioremediation, value-added macromolecule production, and the addition of desirable traits to crops, to name a few.
Golden rice
Golden rice is a genetically modified...
5.1K
Visual System01:26

Visual System

1.2K
Light enters the eye through the cornea, a transparent, dome-shaped surface covering the surface of the eyeball that helps to direct and focus incoming light. This light is then channeled toward the pupil, an adjustable opening whose size is controlled by the iris. The iris, a pigmented muscle, regulates the amount of light entering the eye by contracting or dilating the pupil, thereby ensuring optimal light levels for clear vision.
Once through the pupil, the light passes through the lens, a...
1.2K
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

5.1K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
5.1K
Ligand Binding and Linkage00:49

Ligand Binding and Linkage

3.7K
3.7K
Natural and Artificial Concepts01:24

Natural and Artificial Concepts

347
In psychology, concepts can be divided into two categories: natural and artificial. Natural concepts are formed through direct or indirect experiences. For example, consider the concept of snow. If you live in a place with regular snowfall, such as Essex Junction, Vermont, you know snow through direct experiences. You’ve seen it fall, touched it, shoveled it, and played in it. You recognize its texture, appearance, and even its smell. In contrast, if you live on an island like Saint...
347
Genetic Lingo01:11

Genetic Lingo

108.7K
Overview
108.7K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Consumption of the degradation products of nylon 6 and nylon 6,6 as the sole carbon and nitrogen source by engineered Acinetobacter baylyi.

Metabolic engineering·2026
Same author

drGT: Interpretable Drug Response Prediction with Attention-Guided Gene Attribution on a Drug-Cell-Gene Heterogeneous Graph.

BMC bioinformatics·2026
Same author

TRPM4 Expression as a Predictive Biomarker and a Mechanistic Driver of Acetalax Activity in Prostate Cancer: Preclinical Efficacy Studies.

Molecular cancer therapeutics·2026
Same author

Protecting cells at the genetic level and simulating unauthorized access via a biohackathon.

Science advances·2026
Same author

Synthetic circuits for cell ratio control.

Nature·2026
Same author

Systems biology graphical notation: process description language level 1 version 2.1.

Journal of integrative bioinformatics·2026
Same journal

Updates and validation of the Compi RNA-seq pipeline with a case study in Alzheimer's disease.

Journal of integrative bioinformatics·2026
Same journal

Fragment-level FAIRness: annotating scientific data and its provenance using data fragment selectors.

Journal of integrative bioinformatics·2026
Same journal

Integrating cross-omics research through FAIR Digital Objects with DataPLANT.

Journal of integrative bioinformatics·2026
Same journal

Pheno-App 2.0 - a mobile app for collecting phenotypic data in plant research.

Journal of integrative bioinformatics·2026
Same journal

Evolving bioinformatics services - the journey of KPI metrics with Scorpion.

Journal of integrative bioinformatics·2026
Same journal

The community engagement and empowerment cycle: FAIRagro's framework to foster cultural change towards FAIR RDM practices in agrosystem science and beyond.

Journal of integrative bioinformatics·2026
See all related articles

Related Experiment Video

Updated: Nov 2, 2025

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

18.1K

Synthetic biology open language visual (SBOL Visual) version 2.3.

Hasan Baig1, Pedro Fontanarossa2, Vishwesh Kulkarni3

  • 1University of Connecticut, Storrs, USA.

Journal of Integrative Bioinformatics
|June 7, 2021
PubMed
Summary
This summary is machine-generated.

The Synthetic Biology Open Language Visual (SBOL Visual) standard is updated to version 2.3, enhancing genetic design communication. This update introduces new ways to visualize complex biological interactions and sequence features.

Keywords:
SBOL Visualdiagramsstandards

More Related Videos

Automated Robotic Liquid Handling Assembly of Modular DNA Devices
11:22

Automated Robotic Liquid Handling Assembly of Modular DNA Devices

Published on: December 1, 2017

12.6K
Using Synthetic Biology to Engineer Living Cells That Interface with Programmable Materials
10:28

Using Synthetic Biology to Engineer Living Cells That Interface with Programmable Materials

Published on: March 9, 2017

9.2K

Related Experiment Videos

Last Updated: Nov 2, 2025

A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

18.1K
Automated Robotic Liquid Handling Assembly of Modular DNA Devices
11:22

Automated Robotic Liquid Handling Assembly of Modular DNA Devices

Published on: December 1, 2017

12.6K
Using Synthetic Biology to Engineer Living Cells That Interface with Programmable Materials
10:28

Using Synthetic Biology to Engineer Living Cells That Interface with Programmable Materials

Published on: March 9, 2017

9.2K

Area of Science:

  • Synthetic Biology
  • Bioinformatics
  • Molecular Biology

Background:

  • Effective communication of genetic designs is crucial in synthetic biology.
  • Existing practices for diagramming nucleic acid sequences and molecular interactions lack standardization.
  • The Synthetic Biology Open Language Visual (SBOL Visual) standard aims to systematize these conventions.

Purpose of the Study:

  • To detail version 2.3 of the SBOL Visual standard.
  • To introduce enhancements for visualizing complex biological structures and functions.
  • To provide a coherent visual language for genetic engineering.

Main Methods:

  • The study details the specifications of SBOL Visual version 2.3.
  • It describes new glyphs and conventions for representing molecular interactions and sequence features.
  • Updates include support for higher-level interactions and modifications to existing glyphs.

Main Results:

  • SBOL Visual 2.3 incorporates "interactions with interactions," enabling visualization of complex regulatory networks.
  • Binding to nucleic acid backbones can now be depicted using overlapping glyphs.
  • New glyphs for "unspecified interaction" and "inert DNA spacer" are introduced, with "insulator" deprecated.

Conclusions:

  • SBOL Visual 2.3 offers a more comprehensive and standardized visual language for synthetic biology.
  • The updated standard facilitates clearer communication of genetic designs and molecular mechanisms.
  • These advancements support the systematic organization and expression of genetic engineering.