Urine NMR-based TB metabolic fingerprinting for the diagnosis of TB in children
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Updated: Nov 2, 2025

Sample Preparation of Mycobacterium tuberculosis Extracts for Nuclear Magnetic Resonance Metabolomic Studies
Published on: September 3, 2012
Patricia Comella-Del-Barrio1,2, José Luis Izquierdo-Garcia2,3,4, Jacqueline Gautier5
1Institut d'Investigació Germans Trias i Pujol, Departament de Genètica i Microbiologia, Universitat Autònoma de Barcelona, Badalona, Barcelona, Spain.
Insights
Urine metabolomics can identify differences in children with tuberculosis (TB). This approach may improve TB diagnosis and predict disease progression in pediatric patients.
Area of Science:
- Pediatric Infectious Diseases
- Metabolomics
- Biochemistry
Background:
- Tuberculosis (TB) significantly impacts child morbidity and mortality.
- Early diagnosis and treatment are critical for better outcomes in pediatric TB.
- Accurate diagnostic tools are needed for effective management of childhood TB.
Purpose of the Study:
- To investigate the utility of urine nuclear magnetic resonance (NMR)-based metabolomics for differentiating TB diagnostic certainty in children.
- To identify metabolic differences associated with varying levels of TB diagnosis in pediatric patients.
- To explore metabolomics as a potential tool for improving TB diagnosis and progression prediction in children.
Main Methods:
- Urine samples from 62 children with TB symptoms and 55 healthy children were analyzed.
- High- and low-field proton NMR platforms were used to obtain urine metabolic fingerprints.
- Pattern recognition techniques, including principal components analysis and partial least squares discriminant analysis, were applied.
Main Results:
- Significant differences in urine metabolic fingerprints were observed between children with confirmed/unconfirmed TB and those with unlikely TB (p=0.041, p=0.013).
- Children with unconfirmed TB and TB-compatible X-rays showed distinct metabolic profiles compared to those with non-pathological X-rays (p=0.009).
- Metabolic fingerprint variations correlated with diagnostic certainty in the pediatric TB population.
Conclusions:
- Urine metabolomics can reveal metabolic differences in children with varying diagnostic certainty of TB.
- These findings suggest metabolomics could enhance TB characterization and diagnosis in pediatric populations.
- Metabolomic profiling shows promise for improving TB progression prediction and diagnostic accuracy in children.
Abstract:
Tuberculosis (TB) is a major cause of morbidity and mortality in children, and early diagnosis and treatment are crucial to reduce long-term morbidity and mortality. In this study, we explore whether urine nuclear magnetic resonance (NMR)-based metabolomics could be used to identify differences in the metabolic response of children with different diagnostic certainty of TB. We included 62 children with signs and symptoms of TB and 55 apparently healthy children. Six of the children with presumptive TB had bacteriologically confirmed TB, 52 children with unconfirmed TB, and 4 children with unlikely TB. Urine metabolic fingerprints were identified using high- and low-field proton NMR platforms and assessed with pattern recognition techniques such as principal components analysis and partial least squares discriminant analysis. We observed differences in the metabolic fingerprint of children with bacteriologically confirmed and unconfirmed TB compared to children with unlikely TB (p = 0.041 and p = 0.013, respectively). Moreover, children with unconfirmed TB with X-rays compatible with TB showed differences in the metabolic fingerprint compared to children with non-pathological X-rays (p = 0.009). Differences in the metabolic fingerprint in children with different diagnostic certainty of TB could contribute to a more accurate characterisation of TB in the paediatric population. The use of metabolomics could be useful to improve the prediction of TB progression and diagnosis in children.
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