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Updated: Nov 2, 2025

Direct Restart of a Replication Fork Stalled by a Head-On RNA Polymerase
Published on: April 29, 2010
Elongation factor ELOF1 drives transcription-coupled repair and prevents genome instability
Marit E Geijer1, Di Zhou1, Kathiresan Selvam2
1Department of Molecular Genetics, Oncode Institute, Erasmus MC Cancer Institute, Erasmus University Medical Center, Rotterdam, The Netherlands.
Abstract:
Correct transcription is crucial for life. However, DNA damage severely impedes elongating RNA polymerase II, causing transcription inhibition and transcription-replication conflicts. Cells are equipped with intricate mechanisms to counteract the severe consequence of these transcription-blocking lesions. However, the exact mechanism and factors involved remain largely unknown. Here, using a genome-wide CRISPR-Cas9 screen, we identified the elongation factor ELOF1 as an important factor in the transcription stress response following DNA damage. We show that ELOF1 has an evolutionarily conserved role in transcription-coupled nucleotide excision repair (TC-NER), where it promotes recruitment of the TC-NER factors UVSSA and TFIIH to efficiently repair transcription-blocking lesions and resume transcription. Additionally, ELOF1 modulates transcription to protect cells against transcription-mediated replication stress, thereby preserving genome stability. Thus, ELOF1 protects the transcription machinery from DNA damage via two distinct mechanisms.
Insights
The elongation factor ELOF1 is vital for cellular defense against DNA damage. It aids in repairing transcription-blocking lesions and prevents replication stress, thus maintaining genome stability.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- DNA damage poses a significant threat to cellular processes, including transcription.
- Transcription-blocking lesions impede RNA polymerase II, leading to replication-transcription conflicts and genome instability.
- Cellular mechanisms to counteract DNA damage during transcription are complex and not fully understood.
Purpose of the Study:
- To identify factors involved in the transcription stress response following DNA damage.
- To elucidate the role of the elongation factor ELOF1 in DNA damage repair and genome stability.
Main Methods:
- Genome-wide CRISPR-Cas9 screening to identify key factors in transcription stress response.
- Investigating the function of ELOF1 in transcription-coupled nucleotide excision repair (TC-NER).
- Assessing ELOF1's role in modulating transcription and preventing replication stress.
Main Results:
- The elongation factor ELOF1 was identified as crucial for the transcription stress response.
- ELOF1 plays a conserved role in TC-NER, promoting the recruitment of UVSSA and TFIIH to repair DNA lesions.
- ELOF1 protects against transcription-mediated replication stress, thereby preserving genome stability.
Conclusions:
- ELOF1 is a key player in the cellular response to DNA damage affecting transcription.
- ELOF1 facilitates the repair of transcription-blocking lesions via TC-NER and safeguards genome integrity by mitigating replication stress.
- ELOF1 employs dual mechanisms to protect the transcription machinery from DNA damage.
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