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Machine Learning Classification of Inflammatory Bowel Disease in Children Based on a Large Real-World Pediatric
Nicolas Schneider1, Keywan Sohrabi2, Henning Schneider1
1Institute of Medical Informatics, Justus-Liebig-University Giessen, Gießen, Germany.
Insights
Machine learning, particularly convolutional neural networks, can accurately diagnose pediatric inflammatory bowel diseases (PIBD) using readily available clinical data, improving diagnostic speed and care.
Area of Science:
- Computational medicine
- Pediatric gastroenterology
- Machine learning applications
Background:
- Rising incidence of pediatric inflammatory bowel diseases (PIBD) necessitates improved diagnostic methods.
- Existing machine learning models for PIBD classification often rely on complex data like histology or extensive serology.
- There is a need for diagnostic tools utilizing promptly available clinical data for enhanced patient care.
Purpose of the Study:
- To evaluate the performance of various machine learning algorithms for classifying PIBD using readily accessible data.
- To assess the diagnostic accuracy of models trained on initial and follow-up patient visit data.
- To optimize the best-performing algorithm for clinical application in PIBD diagnostics.
Main Methods:
- Data from the CEDATA-GPGE registry, including inflammatory bowel conditions from initial and follow-up visits, were utilized.
- Patients in remission were excluded, and categorical data were numerically encoded.
- Support vector machine (SVM), random forest (RF), extreme gradient boosting (XGBoost), dense neural network (DNN), and convolutional neural network (CNN) models were employed and compared.
Main Results:
- An optimized convolutional neural network (CNN) achieved up to 90.57% accuracy on data from 2018.
- Other models showed varying performance, with DNN reaching 88.78% and XGBoost at 83.94%.
- Prediction accuracy was higher for more recent datasets (2018) compared to older ones.
Conclusions:
- Machine learning classification, especially using CNNs, is a viable approach for PIBD diagnostics with timely available data.
- The study demonstrates the potential of AI in improving diagnostic latency and quality of care for PIBD.
- Further optimization of CNNs can enhance the accuracy and clinical utility of PIBD diagnostic tools.
Abstract:
Introduction: The rising incidence of pediatric inflammatory bowel diseases (PIBD) facilitates the need for new methods of improving diagnosis latency, quality of care and documentation. Machine learning models have shown to be applicable to classifying PIBD when using histological data or extensive serology. This study aims to evaluate the performance of algorithms based on promptly available data more suited to clinical applications. Methods: Data of inflammatory locations of the bowels from initial and follow-up visitations is extracted from the CEDATA-GPGE registry and two follow-up sets are split off containing only input from 2017 and 2018. Pre-processing excludes patients in remission and encodes the categorical data numerically. For classification of PIBD diagnosis, a support vector machine (SVM), a random forest algorithm (RF), extreme gradient boosting (XGBoost), a dense neural network (DNN) and a convolutional neural network (CNN) are employed. As best performer, a convolutional neural network is further improved using grid optimization. Results: The achieved accuracy of the optimized neural network reaches up to 90.57% on data inserted into the registry in 2018. Less performant methods reach 88.78% for the DNN down to 83.94% for the XGBoost. The accuracy of prediction for the 2018 follow-up dataset is higher than those for older datasets. Neural networks yield a higher standard deviation with 3.45 for the CNN compared to 0.83-0.86 of the support vector machine and ensemble methods. Discussion: The displayed accuracy of the convolutional neural network proofs the viability of machine learning classification in PIBD diagnostics using only timely available data.
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