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Updated: Nov 2, 2025

Characterization of a Pathogenic Escherichia coli Strain Derived from Oreochromis spp. Farms Using Whole-Genome Sequencing
Published on: December 23, 2022
Complete Genome Sequence of Escherichia coli Antibiotic Resistance Isolate Bank Number 0346
Keira L Stuart1, Darrell O Bayles2, Sarah M Shore2
1National Veterinary Services Laboratories, Animal and Plant Health Inspection Service, USDA, Ames, Iowa, USA.
Abstract:
Plasmid-mediated polymyxin resistance encoded by mcr-1 has increased public health concerns due to the potential for rapid horizontal transfer. Here, we report the complete genome sequence of colistin-resistant Escherichia coli Antibiotic Resistance Isolate Bank number 0346, harboring a plasmid-borne mcr-1 gene.
Insights
The mcr-1 gene confers polymyxin resistance in bacteria, raising public health concerns. This study details the complete genome sequence of an mcr-1-carrying, colistin-resistant Escherichia coli strain.
Area of Science:
- Microbiology
- Genomics
- Public Health
Background:
- Plasmid-mediated polymyxin resistance, particularly the mcr-1 gene, poses a significant public health threat.
- The rapid horizontal transfer of resistance genes contributes to the spread of antibiotic resistance.
Purpose of the Study:
- To characterize the complete genome of a colistin-resistant Escherichia coli isolate harboring the mcr-1 gene.
- To provide genomic data for understanding the dissemination of polymyxin resistance.
Main Methods:
- Whole-genome sequencing of the Escherichia coli isolate (Antibiotic Resistance Isolate Bank number 0346).
- Bioinformatic analysis to identify the mcr-1 gene and its plasmid context.
Main Results:
- The complete genome sequence of the colistin-resistant Escherichia coli isolate was determined.
- The presence of the plasmid-borne mcr-1 gene was confirmed in the isolate.
Conclusions:
- The genomic data provides a basis for studying the epidemiology of mcr-1.
- Understanding the genetic context of mcr-1 is crucial for combating polymyxin resistance in clinical settings.
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