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Published on: January 5, 2024
Screening for Lysogen Activity in Therapeutically Relevant Bacteriophages
Fernando L Gordillo Altamirano1, Jeremy J Barr1
1School of Biological Sciences, Monash University, Clayton, VIC, Australia.
Abstract:
Lysogenic phages can integrate into their bacterial host's genome, potentially transferring any genetic information they possess including virulence or resistance genes, and are therefore routinely excluded from therapeutic applications. Lysogenic behavior is typically seen in phages that create turbid plaques or possess subpar bactericidal activity; yet, these are not definitive indicators. As a result, the presence of integrase genes is often used as a hallmark for lysogenic behavior; however, the accuracy of genetic screening for lysogeny depends on the quality of the extraction, sequencing and assembly of the phage genome, and database comparison. The present protocol describes a simple phenotypic test that can be used to screen therapeutically relevant phages for lysogenic behavior. This test relies on the identification of spontaneous phage release from their lysogenized host and can be reliably used in cases where no sequencing data are available. The protocol does not require specialized equipment, is not work-intensive, and is broadly applicable to any phage with an easily culturable bacterial host, making it particularly amenable to settings with limited resources. Graphical abstract: Screening pipeline for lysogen activity of a given phage.
Insights
This study introduces a simple phenotypic test to identify lysogenic phages, which integrate into bacterial genomes. This method aids in screening phages for therapeutic use, especially when genetic data is unavailable.
Area of Science:
- Microbiology
- Bacteriophage Therapy
- Genetics
Background:
- Lysogenic phages integrate into bacterial hosts, potentially transferring harmful genes, limiting their therapeutic use.
- Identifying lysogeny is crucial for phage selection, but traditional methods like plaque appearance or genetic screening have limitations.
- Genetic screening accuracy depends heavily on phage genome quality and database comprehensiveness.
Purpose of the Study:
- To develop a simple, reliable phenotypic test for screening therapeutically relevant phages for lysogenic activity.
- To provide an alternative method for lysogeny detection when sequencing data is unavailable or unreliable.
- To offer a resource-efficient and broadly applicable protocol for phage screening.
Main Methods:
- A phenotypic assay was developed based on detecting spontaneous phage release from lysogenized bacterial hosts.
- The protocol involves culturing lysogenized bacteria and observing for phage production.
- No specialized equipment or intensive labor is required.
Main Results:
- The developed phenotypic test reliably identifies lysogenic behavior through spontaneous phage release.
- The method is effective even in the absence of phage genome sequencing data.
- The protocol is broadly applicable to phages with easily culturable bacterial hosts.
Conclusions:
- A straightforward phenotypic test effectively screens phages for lysogenic potential.
- This method is valuable for assessing phages for therapeutic applications, particularly in resource-limited settings.
- The protocol offers a practical alternative to genetic screening for lysogeny detection.
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