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Updated: Nov 2, 2025

Evaluation of Caspase Activation to Assess Innate Immune Cell Death
Published on: January 20, 2023
Caspase-Dependent Cleavage of DDX21 Suppresses Host Innate Immunity
Wei Wu1, Yang Qu2, Shengqing Yu1
1Department of Avian Infectious Diseases, Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Science, Shanghai, People's Republic of China.
Abstract:
DEAD (Glu-Asp-Ala-Glu) box RNA helicases have been proven to contribute to antiviral innate immunity. The DDX21 RNA helicase was identified as a nuclear protein involved in rRNA processing and RNA unwinding. DDX21 was also proven to be the scaffold protein in the complex of DDX1-DDX21-DHX36, which senses double-strand RNA and initiates downstream innate immunity. Here, we identified that DDX21 undergoes caspase-dependent cleavage after virus infection and treatment with RNA/DNA ligands, especially for RNA virus and ligands. Caspase-3/6 cleaves DDX21 at D126 and promotes its translocation from the nucleus to the cytoplasm in response to virus infection. The cytoplasmic cleaved DDX21 negatively regulates the interferon beta (IFN-β) signaling pathway by suppressing the formation of the DDX1-DDX21-DHX36 complex. Thus, our data identify DDX21 as a regulator of immune balance and most importantly uncover a potential role of DDX21 cleavage in the innate immune response to virus. IMPORTANCE Innate immunity serves as the first barrier against virus infection. DEAD (Glu-Asp-Ala-Glu) box RNA helicases, originally considered to be involved in RNA processing and RNA unwinding, have been shown to play an important role in antiviral innate immunity. The precise regulation of innate immunity is critical for the host because the aberrant production of cytokines leads to unexpected pathological consequences. Here, we identified that DDX21 was cleaved at D126 by virus infection and treatment with RNA/DNA ligands via the caspase-3/6-dependent pathway. The cytoplasmic cleaved DDX21 negatively regulates the IFN-β signaling pathway by suppressing the formation of the DDX1-DDX21-DHX36 complex. In sum, our data identify DDX21 as a regulator of immune balance and most importantly uncover a potential role of DDX21 cleavage in the innate immune response to virus.
Insights
Virus infection causes caspase-dependent cleavage of DDX21 RNA helicase, moving it to the cytoplasm. This cleaved DDX21 then suppresses interferon signaling, revealing a new role in regulating innate immunity.
Area of Science:
- Molecular Biology
- Immunology
- Virology
Background:
- DEAD (Asp-Asp-Glu-Asp) box RNA helicases are crucial for antiviral innate immunity.
- DDX21 RNA helicase functions in rRNA processing, RNA unwinding, and sensing double-stranded RNA.
- DDX21 acts as a scaffold protein in the DDX1-DDX21-DHX36 complex, initiating innate immune responses.
Purpose of the Study:
- To investigate the post-infection modifications of DDX21 RNA helicase.
- To elucidate the role of DDX21 cleavage in the innate immune response to viral infections.
- To understand how DDX21 cleavage impacts interferon-beta (IFN-β) signaling.
Main Methods:
- Analysis of DDX21 cleavage following virus infection and treatment with RNA/DNA ligands.
- Identification of the specific caspases (caspase-3/6) responsible for DDX21 cleavage at D126.
- Tracking the subcellular localization of cleaved DDX21 using microscopy.
- Assessing the impact of cleaved DDX21 on the DDX1-DDX21-DHX36 complex formation and IFN-β signaling.
Main Results:
- DDX21 undergoes caspase-dependent cleavage at D126 upon virus infection and exposure to RNA/DNA ligands.
- Cleavage promotes DDX21 translocation from the nucleus to the cytoplasm.
- Cytoplasmic cleaved DDX21 inhibits the IFN-β signaling pathway by disrupting the DDX1-DDX21-DHX36 complex.
Conclusions:
- DDX21 cleavage is a novel regulatory mechanism in the innate immune response to viral infections.
- Cleaved DDX21 acts as a negative regulator of the IFN-β signaling pathway, impacting immune balance.
- This study uncovers a critical role for DDX21 proteolytic processing in modulating host defense against viruses.
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