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Updated: Nov 2, 2025

Quantification and Whole Genome Characterization of SARS-CoV-2 RNA in Wastewater and Air Samples
Published on: June 30, 2023
Technical framework for wastewater-based epidemiology of SARS-CoV-2
Jinyong Wu1, Zizheng Wang2, Yufei Lin1
1Department of Pharmaceutical & Biological Engineering, School of Chemical Engineering, Sichuan University, Chengdu 610065, China.
Wastewater-based epidemiology (WBE) offers a novel method for tracking SARS-CoV-2 spread. This study presents a framework for quantifying virus levels in wastewater to estimate community infection rates.
Area of Science:
- Environmental science
- Public health
- Molecular biology
Background:
- Wastewater-based epidemiology (WBE) is emerging as a crucial tool for community-level disease surveillance.
- Standardized protocols for SARS-CoV-2 monitoring in wastewater are currently lacking.
- Accurate quantification is essential for reliable public health insights.
Purpose of the Study:
- To establish a comprehensive technical and theoretical framework for SARS-CoV-2 quantification in wastewater.
- To develop a method for estimating community infection ratios using wastewater data.
- To enable horizontal and vertical comparability of WBE data through a standardized approach.
Main Methods:
- Development of a relative quantification framework using quantitative polymerase chain reaction (qPCR).
- Incorporation of a human-specific biomarker as an internal reference for normalization.
- Analysis of critical factors influencing virus detectability and infection ratio estimation, including concentration methods, lag periods, shedding amounts, sewage generation rates, decay kinetics, and hydraulic retention time (HRT).
Main Results:
- Theoretical simulations identified per capita virus shedding amount and sewage generation rate as primary factors affecting virus detectability.
- SARS-CoV-2 RNA decay in wastewater was found to be a slow process with potentially limited impact on detection.
- The proposed framework demonstrates the potential to detect a single infected individual within a population of 400,000 under optimal conditions.
Conclusions:
- The developed framework provides a standardized approach for WBE of SARS-CoV-2.
- Accurate estimation of infection ratios is achievable through careful consideration of influencing factors.
- This methodology enhances the utility of WBE as a public health surveillance tool.
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