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Published on: September 15, 2018
Identification of Potential miRNA-mRNA Regulatory Network Contributing to Hypertrophic Cardiomyopathy (HCM)
Lin Wang1, Fengmin Lu1, Jing Xu1
1Cardiology Department, Tianjin Chest Hospital, Tianjin, China.
Insights
This study identifies a microRNA-mRNA regulatory network and a predictive model for hypertrophic cardiomyopathy (HCM). The findings offer potential new diagnostic tools for this myocardial disease.
Area of Science:
- Cardiovascular Biology
- Molecular Genetics
- Genomics
Background:
- Hypertrophic cardiomyopathy (HCM) is a myocardial disease with largely unknown pathogenesis.
- MicroRNA (miRNA)-mRNA regulatory networks are increasingly implicated in disease development.
- Understanding these networks is crucial for elucidating HCM etiology.
Purpose of the Study:
- To explore the miRNA-mRNA regulatory axis in hypertrophic cardiomyopathy.
- To identify key molecular players and pathways involved in HCM.
- To develop a predictive model for HCM diagnosis.
Main Methods:
- Utilized Gene Expression Omnibus (GEO) database for miRNA and mRNA expression profiles.
- Identified differentially expressed miRNAs (DEMs) and genes (DEGs).
- Constructed a miRNA-mRNA regulatory network and a logistic regression model for HCM prediction.
Main Results:
- Identified 224 upregulated and 366 downregulated DEGs, and 10 upregulated and 14 downregulated DEMs.
- Discovered 384 DEM-targeted genes, with 20 overlapping DEGs.
- A logistic regression model using four miRNAs and three mRNAs demonstrated high predictive performance (AUC > 0.9).
Conclusions:
- A significant miRNA-mRNA regulatory network in HCM was identified.
- The developed logistic regression model shows promise as a diagnostic method for HCM.
- These findings contribute to understanding HCM pathogenesis and offer potential diagnostic strategies.
Abstract:
Background: Hypertrophic cardiomyopathy (HCM) is a myocardial disease with unidentified pathogenesis. Increasing evidence indicated the potential role of microRNA (miRNA)-mRNA regulatory network in disease development. This study aimed to explore the miRNA-mRNA axis in HCM. Methods: The miRNA and mRNA expression profiles obtained from the Gene Expression Omnibus (GEO) database were used to identify differentially expressed miRNAs (DEMs) and genes (DEGs) between HCM and normal samples. Target genes of DEMs were determined by miRTarBase. Gene ontology (GO) annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were conducted to identify biological functions of the DEGs and DEMs. miRNA-mRNA regulatory network was constructed to identify the hub genes and miRNAs. Logistic regression model for HCM prediction was established basing on the network. Results: A total of 224 upregulated and 366 downregulated DEGs and 10 upregulated and 14 downregulated DEMs were determined. We identified 384 DEM-targeted genes, and 20 of them were overlapped with the DEGs. The enriched functions include extracellular structure organization, organ growth, and phagosome and melanoma pathways. The four miRNAs and three mRNAs, including hsa-miR-373, hsa-miR-371-3p, hsa-miR-34b, hsa-miR-452, ARHGDIA, SEC61A1, and MYC, were identified through miRNA-mRNA regulatory network to construct the logistic regression model. The area under curve (AUC) values over 0.9 suggested the good performance of the model. Conclusion: The potential miRNA-mRNA regulatory network and established logistic regression model in our study may provide promising diagnostic methods for HCM.
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