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Updated: Nov 1, 2025

In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
Mechanism, specificity, and function of FANCD2-FANCI ubiquitination and deubiquitination
Kimon Lemonidis1, Connor Arkinson1, Martin L Rennie1
1Institute of Molecular Cell and Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow, UK.
Abstract:
Fanconi anemia (FA) is a rare genetic disorder caused by mutations in any of the currently 22 known FA genes. The products of these genes, along with other FA-associated proteins, participate in a biochemical pathway, known as the FA pathway. This pathway is responsible for the repair of DNA interstrand cross-links (ICL) and the maintenance of genomic stability in response to replication stress. At the center of the pathway is the monoubiquitination of two FA proteins, FANCD2 and FANCI, on two specific lysine residues. This is achieved by the combined action of the UBE2T ubiquitin-conjugating enzyme and a large multicomponent E3 ligase, known as the FA-core complex. This E2-E3 pair specifically targets the FANCI-FANCD2 heterodimer (ID2 complex) for ubiquitination on DNA. Deubiquitination of both FANCD2 and FANCI, which is also critical for ICL repair, is achieved by the USP1-UAF1 complex. Recent work suggests that FANCD2 ubiquitination transforms the ID2 complex into a sliding DNA clamp. Further ubiquitination on FANCI does not alter this closed-on-DNA ID2 conformation. However, the resulting dimonoubiquitinated complex is highly resistant to USP1-UAF1 deubiquitination. This review will provide an update on recent work focusing on how specificity in FANCD2 ubiquitination and deubiquitination is achieved. Recent findings shedding light to the mechanisms, molecular functions, and biological roles of FANCI/FANCD2 ubiquitination and deubiquitination will be also discussed. ENZYMES: UBA1 (6.2.1.45), UBE2T (2.3.2.23), FANCL (2.3.2.27), USP1 (3.4.19.12).
Insights
Fanconi anemia (FA) involves DNA repair through the FA pathway, centered on FANCD2/FANCI ubiquitination. This review details how FANCD2/FANCI ubiquitination and deubiquitination maintain genomic stability during replication stress.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Fanconi anemia (FA) is a rare genetic disorder linked to mutations in 22 FA genes.
- The FA pathway is crucial for repairing DNA interstrand cross-links (ICLs) and maintaining genomic stability under replication stress.
Purpose of the Study:
- To review recent advancements in understanding the specificity of FANCD2 ubiquitination and deubiquitination.
- To discuss the mechanisms, molecular functions, and biological roles of FANCI/FANCD2 ubiquitination and deubiquitination.
Main Methods:
- Focuses on the biochemical interactions of the FA pathway, including the FA-core complex (E3 ligase) and UBE2T (E2 enzyme).
- Examines the role of the USP1-UAF1 complex in deubiquitinating FANCD2 and FANCI.
- Discusses the structural changes of the FANCI-FANCD2 (ID2) complex upon ubiquitination.
Main Results:
- FANCD2 ubiquitination transforms the ID2 complex into a DNA sliding clamp.
- Further FANCI ubiquitination stabilizes this conformation, making it resistant to USP1-UAF1 deubiquitination.
- Specificity in ubiquitination and deubiquitination is key to the FA pathway's function.
Conclusions:
- FANCI/FANCD2 ubiquitination and deubiquitination are critical regulatory steps in DNA ICL repair.
- Understanding these processes provides insight into maintaining genomic stability and FA pathogenesis.
- Recent findings illuminate the precise molecular mechanisms governing these ubiquitination events.
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