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In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila
Published on: August 20, 2019
A homozygous nonsense mutation in DCBLD2 is a candidate cause of developmental delay, dysmorphic features and
Kheloud M Alhamoudi1, Tlili Barhoumi2, Hamad Al-Eidi1
1Medical Genomics Research Department, King Abdullah International Research Center (KAIMRC), King Saud Bin Abdulaziz University for Health Sciences, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Kingdom of Saudi Arabia.
Abstract:
DCBLD2 encodes discodin, CUB and LCCL domain-containing protein 2, a type-I transmembrane receptor that is involved in intracellular receptor signalling pathways and the regulation of cell growth. In this report, we describe a 5-year-old female who presented severe clinical features, including restrictive cardiomyopathy, developmental delay, spasticity and dysmorphic features. Trio-whole-exome sequencing and segregation analysis were performed to identify the genetic cause of the disease within the family. A novel homozygous nonsense variant in the DCBLD2 gene (c.80G > A, p.W27*) was identified as the most likely cause of the patient's phenotype. This nonsense variant falls in the extracellular N-terminus of DCBLD2 and thus might affect proper protein function of the transmembrane receptor. A number of in vitro investigations were performed on the proband's skin fibroblasts compared to normal fibroblasts, which allowed a comprehensive assessment resulting in the functional characterization of the identified DCBLD2 nonsense variant in different cellular processes. Our data propose a significant association between the identified variant and the observed reduction in cell proliferation, cell cycle progression, intracellular ROS, and Ca2 + levels, which would likely explain the phenotypic presentation of the patient as associated with lethal restrictive cardiomyopathy.
Insights
A novel homozygous nonsense variant in the DCBLD2 gene caused severe developmental and cardiac issues in a child. This genetic finding highlights DCBLD2
Area of Science:
- Genetics
- Molecular Biology
- Cardiology
Background:
- Discodin, CUB and LCCL domain-containing protein 2 (DCBLD2) is a type-I transmembrane receptor.
- DCBLD2 plays roles in intracellular receptor signaling and cell growth regulation.
Purpose of the Study:
- To identify the genetic cause of severe clinical features in a 5-year-old female.
- To functionally characterize a novel DCBLD2 variant.
Main Methods:
- Trio-whole-exome sequencing and segregation analysis.
- In vitro investigations using patient-derived skin fibroblasts.
Main Results:
- A novel homozygous nonsense variant (c.80G>A, p.W27*) in DCBLD2 was identified.
- The variant is associated with reduced cell proliferation, cell cycle progression, intracellular ROS, and Ca2+ levels.
- These cellular defects likely explain the patient's phenotype, including restrictive cardiomyopathy.
Conclusions:
- The identified DCBLD2 nonsense variant is the likely cause of the patient's severe phenotype.
- Functional characterization provides insights into the molecular mechanisms underlying the disease.
- This study expands the understanding of DCBLD2's role in human health and disease.
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