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Updated: Jun 13, 2026

Co-analysis of Brain Structure and Function using fMRI and Diffusion-weighted Imaging
Published on: November 8, 2012
QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data
Matthew Cieslak1, Philip A Cook2, Xiaosong He2
1University of Pennsylvania, Philadelphia, PA, USA. matthew.cieslak@pennmedicine.upenn.edu.
Abstract:
Diffusion-weighted magnetic resonance imaging (dMRI) is the primary method for noninvasively studying the organization of white matter in the human brain. Here we introduce QSIPrep, an integrative software platform for the processing of diffusion images that is compatible with nearly all dMRI sampling schemes. Drawing on a diverse set of software suites to capitalize on their complementary strengths, QSIPrep facilitates the implementation of best practices for processing of diffusion images.

