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Fast mesh data augmentation via Chebyshev polynomial of spectral filtering.

Shih-Gu Huang1, Moo K Chung2, Anqi Qiu3

  • 1Department of Biomedical Engineering, National University of Singapore, Singapore.

Neural Networks : the Official Journal of the International Neural Network Society
|June 22, 2021
PubMed
Summary

This study introduces two novel data augmentation methods for surfaces, Laplace-Beltrami eigenfunction Data Augmentation (LB-eigDA) and Chebyshev polynomial Data Augmentation (C-pDA), to enhance deep learning models. These methods improve classification accuracy, particularly for graph convolutional neural networks (graph-CNNs) in medical imaging.

Keywords:
Cortical thicknessData augmentationGraph-CNNLaplace–Beltrami operatorSignals on surfaces

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Area of Science:

  • Computer Vision
  • Medical Image Analysis
  • Machine Learning

Background:

  • Deep neural networks (DNNs) require extensive data for generalization.
  • Data augmentation is crucial when training data is limited.
  • Existing augmentation methods lack applicability to graph or surface data, despite the rise of graph convolutional neural networks (graph-CNNs).

Purpose of the Study:

  • To propose novel, unbiased data augmentation techniques for surface data.
  • To address the gap in augmentation methods for graph-based deep learning.
  • To improve the generalizability and performance of DNNs on surface data.

Main Methods:

  • Laplace-Beltrami eigenfunction Data Augmentation (LB-eigDA): Augments data by resampling Laplace-Beltrami coefficients.
  • Chebyshev polynomial Data Augmentation (C-pDA): A faster approach using polynomial approximation of Laplace-Beltrami spectral filters for data generation on surfaces.
  • Both methods generate data with the same mean as the observed data.

Main Results:

  • LB-eigDA and C-pDA were validated using simulated data, showing improved classification accuracy.
  • Application to Alzheimer's Disease Neuroimaging Initiative (ADNI) brain images demonstrated that augmented cortical thickness data retained a similar pattern to observed data.
  • C-pDA proved faster than LB-eigDA and enhanced the classification accuracy of graph-CNNs for Alzheimer's Disease detection.

Conclusions:

  • The proposed LB-eigDA and C-pDA methods effectively generate new surface data for deep learning.
  • These techniques can enhance the performance of graph-CNNs in medical image analysis, as shown in AD classification.
  • C-pDA offers a computationally efficient alternative for surface data augmentation.