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Updated: Nov 1, 2025

Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Phase separation of p53 precedes aggregation and is affected by oncogenic mutations and ligands
Elaine C Petronilho1, Murilo M Pedrote1, Mayra A Marques1
1Institute of Medical Biochemistry Leopoldo de Meis, National Institute of Science and Technology for Structural Biology and Bioimaging, National Center of Nuclear Magnetic Resonance Jiri Jonas, Federal University of Rio de Janeiro Rio de Janeiro RJ 21941-902 Brazil gaugusto@bioqmed.ufrj.br jerson@bioqmed.ufrj.br.
Abstract:
Mutant p53 tends to form aggregates with amyloid properties, especially amyloid oligomers inside the nucleus, which are believed to cause oncogenic gain-of-function (GoF). The mechanism of the formation of the aggregates in the nucleus remains uncertain. The present study demonstrated that the DNA-binding domain of p53 (p53C) underwent phase separation (PS) on the pathway to aggregation under various conditions. p53C phase separated in the presence of the crowding agent polyethylene glycol (PEG). Similarly, mutant p53C (M237I and R249S) underwent PS; however, the process evolved to a solid-like phase transition faster than that in the case of wild-type p53C. The data obtained by microscopy of live cells indicated that transfection of mutant full-length p53 into the cells tended to result in PS and phase transition (PT) in the nuclear compartments, which are likely the cause of the GoF effects. Fluorescence recovery after photobleaching (FRAP) experiments revealed liquid characteristics of the condensates in the nucleus. Mutant p53 tended to undergo gel- and solid-like phase transitions in the nucleus and in nuclear bodies demonstrated by slow and incomplete recovery of fluorescence after photobleaching. Polyanions, such as heparin and RNA, were able to modulate PS and PT in vitro. Heparin apparently stabilized the condensates in a gel-like state, and RNA apparently induced a solid-like state of the protein even in the absence of PEG. Conditions that destabilize p53C into a molten globule conformation also produced liquid droplets in the absence of crowding. The disordered transactivation domain (TAD) modulated both phase separation and amyloid aggregation. In summary, our data provide mechanistic insight into the formation of p53 condensates and conditions that may result in the formation of aggregated structures, such as mutant amyloid oligomers, in cancer. The pathway of mutant p53 from liquid droplets to gel-like and solid-like (amyloid) species may be a suitable target for anticancer therapy.
Insights
Mutant p53 protein undergoes phase separation and aggregation in the nucleus, contributing to cancer. Targeting this pathway from liquid to solid states offers a potential anticancer therapy strategy.
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Research
Background:
- Mutant p53 protein aggregates with amyloid properties, forming nuclear oligomers linked to oncogenic gain-of-function (GoF).
- The precise mechanism of nuclear aggregate formation in mutant p53 remains unclear.
Purpose of the Study:
- To elucidate the mechanism of mutant p53 aggregation within the nucleus.
- To investigate the role of phase separation (PS) and phase transition (PT) in p53 aggregation and oncogenic activity.
Main Methods:
- Studied the DNA-binding domain of p53 (p53C) and full-length mutant p53 in vitro and in live cells.
- Utilized polyethylene glycol (PEG) as a crowding agent, microscopy, and Fluorescence Recovery After Photobleaching (FRAP).
- Investigated the effects of polyanions (heparin, RNA) and destabilizing conditions on p53C conformation and phase behavior.
Main Results:
- p53C undergoes phase separation (PS) on the pathway to aggregation, accelerated in mutant forms (M237I, R249S).
- Mutant p53 induces PS and phase transition (PT) in the nucleus, correlating with GoF effects.
- FRAP revealed liquid characteristics of nuclear condensates, while mutant p53 showed transitions to gel- and solid-like states.
- Heparin and RNA modulated PS and PT, stabilizing or inducing specific states.
- The disordered transactivation domain (TAD) influenced both PS and amyloid aggregation.
Conclusions:
- Phase separation and transition are key mechanisms in the formation of mutant p53 aggregates, including amyloid oligomers in cancer.
- The progression of mutant p53 from liquid to solid states in the nucleus presents a potential therapeutic target for anticancer strategies.
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