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Updated: Nov 1, 2025

Intracellular Phosphoflow Cytometry of Acute Myeloid Leukemia Patient-Derived Xenotransplants
Published on: June 6, 2025
The contribution of single-cell analysis of acute leukemia in the therapeutic strategy
Lamia Madaci1, Julien Colle1,2, Geoffroy Venton1,2
1Laboratoire TAGC/INSERM UMR 1090, Parc Scientifique de Luminy case 928, 163, Avenue de Luminy, Cedex 09, 13288, Marseille, France.
Abstract:
After decades during which the treatment of acute myeloblastic leukemia was limited to variations around a skeleton of cytarabine/anthracycline, targeted therapies appeared. These therapies, first based on monoclonal antibodies, also rely on specific inhibitors of various molecular abnormalities. A significant but modest prognosis improvement has been observed thanks to these new treatments that are limited by a high rate of relapse, due to the intrinsic chemo and immune-resistance of leukemia stem cell, together with the acquisition of these resistances by clonal evolution. Relapses are also influenced by the equilibrium between the pro or anti-tumor signals from the bone marrow stromal microenvironment and immune effectors. What should be the place of the targeted therapeutic options in light of the tumor heterogeneity inherent to leukemia and the clonal drift of which this type of tumor is capable? Novel approaches by single cell analysis and next generation sequencing precisely define clonal heterogeneity and evolution, leading to a personalized and time variable adapted treatment. Indeed, the evolution of leukemia, either spontaneous or under therapy selection pressure, is a very complex phenomenon. The model of linear evolution is to be forgotten because single cell analysis of samples at diagnosis and at relapse show that tumor escape to therapy occurs from ancestral as well as terminal clones. The determination by the single cell technique of the trajectories of the different tumor sub-populations allows the identification of clones that accumulate factors of resistance to chemo/immunotherapy ("pan-resistant clones"), making possible to choose the combinatorial agents most likely to eradicate these cells. In addition, the single cell technique identifies the nature of each cell and can analyze, on the same sample, both the tumor cells and their environment. It is thus possible to evaluate the populations of immune effectors (T-lymphocytes, natural killer cells) for the leukemia stress-induced alteration of their functions. Finally, the single cells techniques are an invaluable tool for evaluation of the measurable residual disease since not only able to quantify but also to determine the most appropriate treatment according to the sensitivity profile to immuno-chemotherapy of remaining leukemic cells.
Insights
Targeted therapies improve acute myeloblastic leukemia treatment but relapse persists due to resistant leukemia stem cells. Single-cell analysis reveals clonal evolution and identifies pan-resistant clones for personalized, adaptive combination therapies.
Area of Science:
- Hematology
- Oncology
- Molecular Biology
- Immunology
Background:
- Acute myeloblastic leukemia (AML) treatment historically relied on cytarabine/anthracycline chemotherapy.
- Emerging targeted therapies, including monoclonal antibodies and molecular inhibitors, offer modest prognostic improvements.
- High relapse rates persist due to chemo- and immune-resistant leukemia stem cells and clonal evolution.
Purpose of the Study:
- To investigate the role of targeted therapies in AML considering tumor heterogeneity and clonal evolution.
- To explore how single-cell analysis can guide personalized and adaptive treatment strategies for AML.
- To understand the complex evolutionary dynamics of AML under therapeutic pressure.
Main Methods:
- Application of single-cell analysis and next-generation sequencing to define AML clonal heterogeneity and evolution.
- Analysis of tumor cells and their microenvironment, including immune effector populations (T-lymphocytes, NK cells).
- Assessment of measurable residual disease (MRD) using single-cell techniques.
Main Results:
- Single-cell analysis demonstrates non-linear AML evolution, with therapy escape occurring from both ancestral and terminal clones.
- Identification of 'pan-resistant clones' accumulating resistance factors to chemo- and immunotherapy.
- Detailed characterization of immune effector cell function and microenvironmental influences on treatment response.
Conclusions:
- Single-cell analysis provides a precise understanding of AML clonal heterogeneity and evolution, enabling personalized treatment.
- This approach allows for the identification of specific resistant clones and the selection of optimal combination therapies.
- Single-cell techniques are crucial for evaluating MRD and tailoring post-treatment strategies based on remaining leukemic cell sensitivity.

