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Genotyping Single Nucleotide Polymorphisms in the Mitochondrial Genome by Pyrosequencing
Published on: February 10, 2023
Prospective diagnosis of MT-ATP6-related mitochondrial disease by newborn screening
Ryan H Peretz1, Nicholas Ah Mew2, Hilary J Vernon3
1National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, United States.
Insights
Newborn screening revealed low citrulline and elevated C5-OH levels in six patients. This combination indicates pathogenic variants in MT-ATP6, a gene associated with Leigh syndrome, but early treatment may prevent neurological issues.
Area of Science:
- Biochemistry
- Genetics
- Pediatrics
Background:
- Newborn screening (NBS) panels, including the Recommended Uniform Screening Panel (RUSP), identify elevated citrulline and C5-OH.
- Low citrulline levels can indicate proximal urea cycle disorders.
- Some NBS programs report low citrulline and/or elevated C5-OH.
Purpose of the Study:
- To investigate the significance of combined low citrulline and elevated C5-OH levels detected via NBS.
- To identify the genetic cause and clinical spectrum associated with these biochemical findings.
- To evaluate the efficacy of early diagnosis and treatment for affected individuals.
Main Methods:
- Analysis of six patients with abnormal NBS results (low citrulline and/or elevated C5-OH).
- Confirmatory biochemical testing including plasma amino acid analysis and acylcarnitine profiling.
- Mitochondrial DNA sequencing to identify pathogenic variants.
Main Results:
- All six patients harbored pathogenic variants in MT-ATP6 at high heteroplasmy levels.
- These variants are associated with Leigh syndrome, a neurodegenerative disorder.
- Affected individuals showed no metabolic crises or developmental regression with early treatment.
- Asymptomatic or paucisymptomatic mothers and siblings carried the familial variant, expanding the clinical spectrum.
Conclusions:
- The combination of low citrulline and elevated C5-OH on NBS is specific for pathogenic MT-ATP6 variants.
- Early diagnosis and treatment, including citrulline supplementation, can potentially prevent neurological sequelae of Leigh syndrome.
- Pathogenic MT-ATP6 variants present a broader clinical spectrum than previously recognized, including asymptomatic or mildly affected relatives.
Abstract:
Elevated citrulline and C5-OH levels are reported as part of the newborn screening of core and secondary disorders on the Recommended Uniform Screening Panel (RUSP). Additionally, some state laboratory newborn screening programs report low citrulline levels, which may be observed in proximal urea cycle disorders. We report six patients who were found on newborn screening to have low citrulline and/or elevated C5-OH levels in whom confirmatory testing showed the combination of these two abnormal analytes. Mitochondrial sequencing revealed known pathogenic variants in MT-ATP6 at high heteroplasmy levels in all cases. MT-ATP6 at these heteroplasmy levels is associated with Leigh syndrome, a progressive neurodegenerative disease. Patients were treated with supplemental citrulline and, in some cases, mitochondrial cofactor therapy. These six patients have not experienced metabolic crises or developmental regression, and early diagnosis and management may help prevent the neurological sequelae of Leigh syndrome. The affected mothers and siblings are asymptomatic or paucisymptomatic (e.g. intellectual disability, depression, migraines, obsessive-compulsive disorder, and poor balance) despite high heteroplasmy or apparent homoplasmy of the familial variant, thus expanding the clinical spectrum seen in pathogenic variants of MT-ATP6. Confirmatory plasma amino acid analysis and acylcarnitine profiling should be ordered in a patient with either low citrulline and/or elevated C5-OH, as this combination appears specific for pathogenic variants in MT-ATP6.
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