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Updated: Oct 31, 2025

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Robust 3D DNA FISH Using Directly Labeled Probes
Published on: August 15, 2013
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Terminal Deoxynucleotidyl Transferase Mediated Production of Labeled Probes for Single-molecule FISH or RNA Capture
Imre Gaspar1, Frank Wippich1, Anne Ephrussi1
1Developmental Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Meyerhofstrasse 1, 69117 Germany.
Bio-Protocol
|June 28, 2021
Abstract:
Arrays of short, singly-labeled ssDNA oligonucleotides enable in situ hybridization with single molecule sensitivity and efficient transcript specific RNA capture. Here, we describe a simple, enzymatic protocol that can be carried out using basic laboratory equipment to convert arrays of PCR oligos into smFISH and RAP probesets in a quantitative, cost-efficient and flexible way.
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