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Updated: Oct 30, 2025

Using the E1A Minigene Tool to Study mRNA Splicing Changes
Published on: April 22, 2021
The Exon Junction Complex Core Represses Cancer-Specific Mature mRNA Re-splicing: A Potential Key Role in Terminating
Yuta Otani1,2, Ken-Ichi Fujita1, Toshiki Kameyama1,3
1Division of Gene Expression Mechanism, Institute for Comprehensive Medical Science, Fujita Health University, Toyoake 470-1192, Aichi, Japan.
Abstract:
Using TSG101 pre-mRNA, we previously discovered cancer-specific re-splicing of mature mRNA that generates aberrant transcripts/proteins. The fact that mRNA is aberrantly re-spliced in various cancer cells implies there must be an important mechanism to prevent deleterious re-splicing on the spliced mRNA in normal cells. We thus postulated that mRNA re-splicing is controlled by specific repressors, and we searched for repressor candidates by siRNA-based screening for mRNA re-splicing activity. We found that knock-down of EIF4A3, which is a core component of the exon junction complex (EJC), significantly promoted mRNA re-splicing. Remarkably, we could recapitulate cancer-specific mRNA re-splicing in normal cells by knock-down of any of the core EJC proteins, EIF4A3, MAGOH, or RBM8A (Y14), implicating the EJC core as the repressor of mRNA re-splicing often observed in cancer cells. We propose that the EJC core is a critical mRNA quality control factor to prevent over-splicing of mature mRNA.
Insights
Cancer cells exhibit aberrant mRNA re-splicing. Researchers identified the exon junction complex (EJC) core as a repressor, preventing this in normal cells and acting as an mRNA quality control factor.
Area of Science:
- Molecular Biology
- Cancer Biology
- RNA Splicing
Background:
- Aberrant mRNA re-splicing generating abnormal transcripts/proteins is observed in cancer cells.
- A mechanism preventing deleterious re-splicing in normal cells is implied but not fully understood.
Purpose of the Study:
- To identify repressors controlling mRNA re-splicing.
- To elucidate the role of specific proteins in preventing aberrant splicing in normal cells.
Main Methods:
- siRNA-based screening to identify mRNA re-splicing repressors.
- Knock-down experiments targeting core exon junction complex (EJC) proteins (EIF4A3, MAGOH, RBM8A/Y14).
Main Results:
- Knock-down of EIF4A3 significantly promoted mRNA re-splicing.
- Knock-down of any core EJC protein recapitulated cancer-specific mRNA re-splicing in normal cells.
Conclusions:
- The EJC core (EIF4A3, MAGOH, RBM8A) acts as a repressor of mRNA re-splicing.
- The EJC core functions as a critical mRNA quality control factor to prevent over-splicing in mature mRNA.
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