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Updated: Oct 29, 2025

A Practical Guide to Phylogenetics for Nonexperts
Published on: February 5, 2014
tinselR-an R Shiny Application for Annotating Phylogenetic Trees
Jennafer A P Hamlin1,2, Teofil Nakov3, Amanda Williams-Newkirk2
1Association of Public Health Laboratories Bioinformatics, Silver Spring, Maryland, USA.
Abstract:
Public health laboratories obtain whole-genome sequences of pathogens to confirm outbreaks and identify transmission routes. Here, we present tinselR, an open-source and user-friendly application for visualization and annotation of relatedness among pathogens with phylogenetic trees. By combining annotation and phylogenetics, we simplify one critical step in the pathogen analysis workflow.
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