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Updated: Oct 29, 2025

Lung CT Segmentation to Identify Consolidations and Ground Glass Areas for Quantitative Assesment of SARS-CoV Pneumonia
Published on: December 19, 2020
Diagnosis of COVID-19: Considerations, controversies and challenges
K Dheda1,2, S Jaumdally1, M Davids1
1Centre for Lung Infection and Immunity, Division of Pulmonology, Department of Medicine and UCT Lung Institute and South African MRC/UCT Centre for the Study of Antimicrobial Resistance, University of Cape Town, South Africa.
Insights
Reverse transcription polymerase chain reaction (RT-PCR) is a key diagnostic tool for COVID-19 but has limitations. Antibody tests show promise for surveillance and understanding immunity after symptom resolution.
Area of Science:
- Virology
- Infectious Diseases
- Epidemiology
Background:
- The COVID-19 pandemic, caused by SARS-CoV-2, has led to millions of cases and deaths globally.
- Most symptomatic COVID-19 cases present with mild upper respiratory tract symptoms.
- Accurate and timely diagnosis is crucial for managing the pandemic.
Purpose of the Study:
- To evaluate the diagnostic utility of RT-PCR and antibody-based immunoassays for COVID-19.
- To understand the temporal dynamics of viral RNA detection and antibody responses.
- To explore the potential roles of different diagnostic methods in clinical management and public health.
Main Methods:
- Reverse transcription polymerase chain reaction (RT-PCR) on nasopharyngeal samples for viral RNA detection.
- Detection of IgM and IgG antibodies following symptom onset.
- Evaluation of antibody-based immunoassays for diagnostic and surveillance applications.
Main Results:
- RT-PCR has an approximate 30% false-negative rate early in disease or in mild cases, often necessitating repeat testing.
- Viral RNA detection by RT-PCR can persist post-symptom resolution.
- IgM and IgG antibody responses become detectable several days after symptom onset, with robust responses in the second week.
- Antibody-based immunoassays have limited utility in diagnosing early symptomatic disease but may be useful for surveillance.
Conclusions:
- RT-PCR remains the primary diagnostic method for COVID-19, despite potential for false negatives.
- Antibody testing is valuable for assessing past infection and immune status, aiding surveillance efforts.
- Ongoing research is clarifying the role of antibody tests in conjunction with RT-PCR for early diagnosis and other applications, such as vaccination assessment and workforce screening.
Abstract:
Coronavirus disease 2019 (COVID-19) due to a novel virus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a global pandemic that has resulted in over 1.5 million confirmed cases and close to 100 000 deaths. In the majority of symptomatic cases, COVID-19 results in a mild disease predominantly characterised by upper respiratory tract symptoms. Reverse transcription polymerase chain reaction (RT-PCR) using a nasopharyngeal sample is the mainstay of diagnosis, but there is an ~30% false negative rate early in the disease and in patients with mild disease, and therefore repeat testing may be required. RT-PCR positivity can persist for several days after resolution of symptoms. IgM and IgG antibody responses become positive several days after the onset of symptoms, and robust antibody responses are detectable in the second week of illness. Antibody-based immunoassays have a limited role in the diagnosis of early symptomatic disease. However, their incremental benefit over RT-PCR in the first 2 weeks of illness is currently being clarified in ongoing studies. Such assays may be useful for surveillance purposes. However, their role in potentially selecting individuals who may benefit from vaccination, or as a biomarker identifying persons who could be redeployed into essential employment roles, is being investigated. Rapid antibody-based immunoassays that detect viral antigen in nasopharyngeal samples are being developed and evaluated.
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