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Updated: Oct 29, 2025

Enhanced Genome Editing with Cas9 Ribonucleoprotein in Diverse Cells and Organisms
Published on: May 25, 2018
Improved CRISPR genome editing using small highly active and specific engineered RNA-guided nucleases
Moritz J Schmidt1, Ashish Gupta1, Christien Bednarski1
1Bayer AG, Leverkusen, Germany.
Abstract:
Streptococcus pyogenes (Spy) Cas9 has potential as a component of gene therapeutics for incurable diseases. One of its limitations is its large size, which impedes its formulation and delivery in therapeutic applications. Smaller Cas9s are an alternative, but lack robust activity or specificity and frequently recognize longer PAMs. Here, we investigated four uncharacterized, smaller Cas9s and found three employing a "GG" dinucleotide PAM similar to SpyCas9. Protein engineering generated synthetic RNA-guided nucleases (sRGNs) with editing efficiencies and specificities exceeding even SpyCas9 in vitro and in human cell lines on disease-relevant targets. sRGN mRNA lipid nanoparticles displayed manufacturing advantages and high in vivo editing efficiency in the mouse liver. Finally, sRGNs, but not SpyCas9, could be packaged into all-in-one AAV particles with a gRNA and effected robust in vivo editing of non-human primate (NHP) retina photoreceptors. Human gene therapy efforts are expected to benefit from these improved alternatives to existing CRISPR nucleases.
Insights
Researchers engineered smaller, highly effective CRISPR gene editing tools called synthetic RNA-guided nucleases (sRGNs). These novel Cas9 alternatives show promise for gene therapy, overcoming limitations of current systems for treating diseases.
Area of Science:
- Molecular Biology
- Gene Editing Technologies
- Biotechnology
Background:
- Streptococcus pyogenes Cas9 (SpyCas9) is a powerful gene editing tool but its large size poses delivery challenges for gene therapy.
- Existing smaller Cas9 variants often exhibit reduced activity or specificity and recognize different PAM sequences.
- There is a need for smaller, highly efficient, and specific Cas9 nucleases for therapeutic applications.
Purpose of the Study:
- To investigate uncharacterized smaller Cas9 proteins as potential alternatives to SpyCas9.
- To engineer novel synthetic RNA-guided nucleases (sRGNs) with enhanced editing efficiency and specificity.
- To evaluate the therapeutic potential of sRGNs in vitro and in vivo for gene therapy applications.
Main Methods:
- Screening of four uncharacterized smaller Cas9 proteins.
- Protein engineering of identified Cas9 variants to create sRGNs.
- In vitro and human cell line validation of sRGN editing efficiency and specificity.
- In vivo delivery studies using mRNA lipid nanoparticles in mice and adeno-associated virus (AAV) vectors in non-human primates (NHPs).
Main Results:
- Three novel smaller Cas9 enzymes were identified, utilizing a "GG" PAM sequence similar to SpyCas9.
- Engineered sRGNs demonstrated superior in vitro and in human cell line editing efficiency and specificity compared to SpyCas9.
- sRGN mRNA lipid nanoparticles showed efficient in vivo editing in mouse liver.
- sRGNs, but not SpyCas9, were successfully packaged into all-in-one AAV vectors for robust in vivo editing in NHP retina photoreceptors.
Conclusions:
- Engineered sRGNs represent a significant advancement over existing CRISPR nucleases, offering improved performance and delivery advantages.
- These novel nucleases overcome key limitations of SpyCas9, paving the way for more effective gene therapies.
- The successful in vivo application in NHP retina photoreceptors highlights the potential of sRGNs for treating genetic disorders affecting vision.
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