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On the stability of log-rank test under labeling errors
Ben Galili1, Anat Samohi2, Zohar Yakhini1,2
1Faculty of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel.
Bioinformatics (Oxford, England)
|July 13, 2021
Summary
Labeling errors can impact survival analysis results. This study introduces a novel algorithm and Python tool (LoRSI) to calculate stability intervals, quantifying the effect of such errors on log-rank P-values.
Area of Science:
- Biostatistics
- Survival Analysis
- Computational Biology
Background:
- The log-rank test is a standard statistical method for comparing survival distributions between groups.
- Accurate sample labeling is a critical assumption for the validity of log-rank test results.
- Potential errors in sample labeling can compromise the reliability of survival analysis outcomes.
Purpose of the Study:
- To investigate the impact of sample labeling errors on log-rank test outcomes.
- To develop a method for quantifying the uncertainty introduced by labeling errors in survival analysis.
- To provide a practical tool for assessing the robustness of log-rank test results to labeling inaccuracies.
Main Methods:
- Introduced and defined a novel concept of uncertainty arising from labeling errors in the log-rank test.
- Developed a new algorithm for efficiently calculating a stability interval around the log-rank P-value.
- Proved the mathematical correctness of the developed algorithm.
Main Results:
- Demonstrated the algorithm's effectiveness on multiple real-world datasets.
- Quantified the potential impact of labeling errors on the statistical significance of survival differences.
- Established a method to assess the stability of log-rank test results.
Conclusions:
- Labeling errors introduce uncertainty into log-rank test results.
- The developed stability interval provides a robust measure of P-value reliability.
- The LoRSI tool facilitates the assessment of survival analysis robustness in the presence of labeling noise.
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